Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCCTTAGTGCAGAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgcttaaacttgaataaattgtccactctttgtttttggaaaatttccatcttcatatcaagtttctatttaaagagaaagtgcggcctcatagttattttaagctagaataattggtcttttttttgtggaaattaactcttcagttcctcctattaatggtacag

Basic information

species Zea mays
transcript GRMZM2G110153_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G110153_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g66030.1 (Oryza sativa), 5'ss of exon 3
AGCCTTAGTGCAGAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgcttaaacttgaataaattgtccactctttgtttttggaaaatttccatcttcatatcaagtttctatttaaagagaaagtgcggcctcatagttattttaagctagaataattggtcttttttttgtggaaattaactcttcagttcctcctattaatggtacag
|||||||| || |||||||| || || |||||||||||||| |  |||||||| |||||||||| ||| ||| | | |  | | |  ||    || || |  || | |  |    ||     |||   || |||      |||  |    |   | | | || ||       | | | |                                                       
AGCCTTAGCGCGGAGATTGATCGAATCAAGAAAGAGAACGATAATATGCAGATTGAGCTCAGgtaaattcttcagcctttaaatagggttgtttccttttcatttggacttcagtattactgtattg-gtatctgc--ggagattacagtcaaacccgttgtcatggattcatggtacag------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24773583|gb|CA408837.1|CA408837
EST:     GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAG                         GCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
genomic: GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
EST: gi|211487268|gb|FL256095.1|FL256095
EST:     GAGATTGACCGTATAAAGAAAGAGAMCGACACCATGCAGATCGAGCTCAG                         GCACCTGAAAG
genomic: GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACCTGAAAG
EST: gi|8665535|gb|BE186351.1|BE186351
EST:     GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAG                         GCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
genomic: GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
EST: gi|24773763|gb|CA409017.1|CA409017
EST:     GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAG                         GCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
genomic: GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
EST: gi|24773831|gb|CA409085.1|CA409085
EST:     GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAG                         GCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
genomic: GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
EST: gi|211495937|gb|FL256149.1|FL256149
EST:     GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAG                         GCACCTGAAAGGTGAAGATCTAAACTCGCTGC
genomic: GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACCTGAAAGGTGAAGATCTAAACTCGCTGC
EST: gi|24773567|gb|CA408821.1|CA408821
EST:     GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAG                         GCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
genomic: GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
EST: gi|24774106|gb|CA409360.1|CA409360
EST:     GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAG                         GCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
genomic: GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
EST: gi|211487267|gb|FL256094.1|FL256094
EST:     AGATTGACCGTATAAAGAAAGAAGAACGACACCATGCAGATCGAGCTCAG                         GCACCTGAAAGGTGA-GATCCTAA-CTCGCTGCAAC
genomic: AGATTGACCGTATAAAGAAAGA-GAACGACACCATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACCTGAAAGGTGAAGATC-TAAACTCGCTGCAAC
EST: gi|24773746|gb|CA409000.1|CA409000
EST:     GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAG                         GCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
genomic: GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
EST: gi|78105786|gb|DV524204.1|DV524204
EST:     GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAG                         GCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
genomic: GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
EST: gi|211493048|gb|FL256134.1|FL256134
EST:     GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAG                         GCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
genomic: GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
EST: gi|211490154|gb|FL256112.1|FL256112
EST:     GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAG                         GCACCCTGAAAGGTGAAAGATCTAAACTCGCTGCAACCCAAAGACSTGATC
genomic: GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACC-TGAAAGGTGAA-GATCTAAACTCGCTGCAACCCAAAGACCTGATC
EST: gi|76014906|gb|DT942076.1|DT942076
EST:     GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAG                         GCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
genomic: GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
EST: gi|211495926|gb|FL256138.1|FL256138
EST:     GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAG                         GCACCTGAAAG-TGAAGATCTAAACTCGCTGCAACCCAAAGGACCTGATCA
genomic: GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAG-ACCTGATCA
EST: gi|28987626|gb|CB351728.1|CB351728
EST:     GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAG                         GCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
genomic: GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
EST: gi|6826955|gb|AW330598.1|AW330598
EST:     GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAG                         GCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
genomic: GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
EST: gi|211490161|gb|FL256119.1|FL256119
EST:     GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAG                         GCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
genomic: GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
EST: gi|211487266|gb|FL256093.1|FL256093
EST:     GAGATTGACCGTATAAAGAAWGAGAACGACACCATGCAGATCGAGCTCAG                         GCACCTGAAAGGTGAAGATCTAAACTC
genomic: GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACCTGAAAGGTGAAGATCTAAACTC
EST: gi|24774102|gb|CA409356.1|CA409356
EST:     GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAG                         GCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
genomic: GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
EST: gi|89250546|gb|DY622332.1|DY622332
EST:     GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAG                         GCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
genomic: GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
EST: gi|211490158|gb|FL256116.1|FL256116
EST:     GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAG                         GCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGA
genomic: GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGA
EST: gi|24773877|gb|CA409131.1|CA409131
EST:     GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAG                         GCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
genomic: GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
EST: gi|24773148|gb|CA408402.1|CA408402
EST:     GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAG                         GCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
genomic: GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
EST: gi|76918695|gb|DV167419.1|DV167419
EST:     GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAG                         GCACCTGANAGGTGAAGATCTA
genomic: GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACCTGAAAGGTGAAGATCTA
EST: gi|24774113|gb|CA409367.1|CA409367
EST:     GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAG                         GCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
genomic: GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
EST: gi|211493045|gb|FL256131.1|FL256131
EST:     GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAG                         GCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
genomic: GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
EST: gi|211493047|gb|FL256133.1|FL256133
EST:     GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAG                         GCACCTGAAAGG
genomic: GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACCTGAAAGG
EST: gi|24773705|gb|CA408959.1|CA408959
EST:     GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAG                         GCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
genomic: GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
EST: gi|50325396|gb|CO520522.1|CO520522
EST:     GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAG                         GCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
genomic: GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
EST: gi|12046043|gb|BF728182.1|BF728182
EST:     GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAG                         GCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
genomic: GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
EST: gi|76014905|gb|DT942075.1|DT942075
EST:     GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAG                         GCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
genomic: GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
EST: gi|71315886|gb|DR794629.1|DR794629
EST:     GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAG                         GCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
genomic: GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
EST: gi|211493037|gb|FL256123.1|FL256123
EST:     GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAG                         GCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
genomic: GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
EST: gi|24773871|gb|CA409125.1|CA409125
EST:     GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAG                         GCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
genomic: GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
EST: gi|24774166|gb|CA409420.1|CA409420
EST:     GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAG                         GCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
genomic: GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
EST: gi|211493044|gb|FL256130.1|FL256130
EST:     GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAG                         GCACCTGAAAG
genomic: GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACCTGAAAG
EST: gi|24773802|gb|CA409056.1|CA409056
EST:     GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAG                         GCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
genomic: GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
EST: gi|31909810|gb|CD651105.1|CD651105
EST:     GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAG                         GCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
genomic: GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
EST: gi|24773882|gb|CA409136.1|CA409136
EST:     GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAG                         GCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
genomic: GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
EST: gi|211490157|gb|FL256115.1|FL256115
EST:     GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAG                         GCACCTGAAAG
genomic: GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACCTGAAAG
EST: gi|74243567|gb|DT651481.1|DT651481
EST:     GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAG                         GCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
genomic: GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
EST: gi|211495939|gb|FL256151.1|FL256151
EST:     GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAG                         GCACCTGAAAG-TGAAGATCTAAACTCGCTGCAACTCAAAGA
genomic: GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGA
EST: gi|24773785|gb|CA409039.1|CA409039
EST:     GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAG                         GCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
genomic: GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
EST: gi|211487271|gb|FL256098.1|FL256098
EST:     GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAG                         GCACCTGAAAGGTGAAGATCTAAAACTCGCTGCAACCCAAAGACCTGATCA
genomic: GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACCTGAAAGGTGAAGATCTAAA-CTCGCTGCAACCCAAAGACCTGATCA
EST: gi|95107668|gb|EB739897.1|EB739897
EST:     CATGCAGATCAAGCTCAG                         GCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
genomic: CATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
EST: gi|211490163|gb|FL256121.1|FL256121
EST:     GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAG                         GCACCTGAAAGGTGAA
genomic: GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACCTGAAAGGTGAA
EST: gi|24934828|gb|CA453046.1|CA453046
EST:     CACCATGCAGATCGAGCTCAG                         GCACCTGCAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCA
genomic: CACCATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACCTG-AAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCA
EST: gi|211487278|gb|FL256105.1|FL256105
EST:     GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAG                         GCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCA
genomic: GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCA
EST: gi|211487269|gb|FL256096.1|FL256096
EST:     GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAG                         GCACCTGAAAG
genomic: GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACCTGAAAG
EST: gi|24961544|gb|CA483553.1|CA483553
EST:     GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAG                         GCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
genomic: GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
EST: gi|24773434|gb|CA408688.1|CA408688
EST:     GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAG                         GCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT
genomic: GAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 119

AGCCTTAGTGCAGAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCATGATCGAGGAGGCACTTGATAATGGACTGACGAACCTGAATGAGAAACTG


Block sizes: 22 (upstream exon), 49 (downstream exon)
Score: 15

AGCCTTAGTGCAGAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCATGATCGAGGAGGCACTTGATAATGGACTGACGAACCTGAATGAGAAACTG


Block sizes: 44 (upstream exon), 47 (downstream exon)
Score: 8

AGCCTTAGTGCAGAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCATGATCGAGGAGGCACTTGATAATGGACTGACGAACCTGAATGAGAAACTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1188

AGCCTTAGTGCAGAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgctt ... aatggtacagGCACCTGAAAGGTGAAGATCTAAACTCGCTGCAACCCAAAGACCTGATCATGATCGAGGAGGCACTTGATAATGGACTGACGAACCTGAATGAGAAACTG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCCTTAGTGCAGAGATTGACCGTATAAAGAAAGAGAACGACACCATGCAGATCGAGCTCAGgtgaatgcttaaacttgaataaattgtccactctttgtttttggaaaatttccatcttcatatcaagtttctatttaaagagaaagtgcggcctcatagttattttaagctagaataattggtcttttttttgtggaaattaactcttcagttcctcctattaatggtacag

- - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - -  AAGAGA
- - - - - - - - - - - - - - - - - - - - - - -  GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA