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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCGGGGACTCGAGGGGTTTTGCGTTCGTGCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATGgtggttttttttttcgactgtgctccacatgtggggattttggagcttctatttttgataattgtagattttttgggtgcag

Basic information

species Zea mays
transcript GRMZM2G110143_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G110143_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os08g37960.2 (Oryza sativa), 5'ss of exon 3
GACCGGGGACTCGAGGGGTTTTGCGTTCGTGCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATGgtg------gttttttttttcgactgtgctccacatgtggggattttg----gagcttct-atttttga---taattgtagattttttgg---gtgcag
||| |||||||||||||| || ||||||||||| ||||||||||| || |||||||||||||||||||||||||| |||||||       ||||||| ||    ||    |    |||  || ||| |    ||  |||| ||  ||||   | || ||   ||||||     ||||||
GACTGGGGACTCGAGGGGATTCGCGTTCGTGCGCTACAAGTACGCTGAAGAGGCGCAGAAGGCTATAGATCGGCTTGATGgtgcgtaacctttttttctttttttgattcctttgtgtttgggtttcgttctgaatttctgatgattgagtctgatggtgttttttttacgctgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211440859|gb|FL253848.1|FL253848
EST:     GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATG                         GCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAA
genomic: GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATGgtggtttttt ... ttgggtgcagGCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAA
EST: gi|211008119|gb|FL365557.1|FL365557
EST:     GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATG                         GCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGC
genomic: GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATGgtggtttttt ... ttgggtgcagGCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGC
EST: gi|211235451|gb|FL353173.1|FL353173
EST:     GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATG                         GCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTT
genomic: GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATGgtggtttttt ... ttgggtgcagGCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTT
EST: gi|211470092|gb|FL331953.1|FL331953
EST:     GCGGTACAAGTACGCCGACGAGSS-CAGAAGGCTATAGATCGGCTCGATG                         GCCGTAATGTGGATNGGAGGAACATCATGGTGCAGTTTGCAAA
genomic: GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATGgtggtttttt ... ttgggtgcagGCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAA
EST: gi|78105340|gb|DV523758.1|DV523758
EST:     GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATG                         GCCGTAATGTGGATGGGA
genomic: GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATGgtggtttttt ... ttgggtgcagGCCGTAATGTGGATGGGA
EST: gi|211440857|gb|FL253846.1|FL253846
EST:     GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATG                         GCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAA
genomic: GCGGTACAAGTACGCCGACGAGGCGCAGAAGGCTATAGATCGGCTCGATGgtggtttttt ... ttgggtgcagGCCGTAATGTGGATGGGAGGAACATCATGGTGCAGTTTGCAAA