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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATCATGCTATTGCGCTCCCTGAAAGAGTTAATCCAGCCAGTTTGAGTTTGATTCTTGACTACTGCCGGTTTCATCAGGTTACTGGGCGCTCAAACAAGgtatgctacaattttaaattttccagtatatttcacctgttgagtttacgtaggttccaataatcttagtagtttttcccttatatgtgctatgcag

Basic information

species Zea mays
transcript GRMZM2G109725_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G109725_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g01660.1 (Oryza sativa), 5'ss of exon 3
AAATCATGCTATTGCGCTCCCTGAAAGAGTTAATCCAGCCAGTTTGAGTTTGATTCTTGACTACTGCCGGTTTCATCAGGTTACTGGGCGCTCAAACAAGgtatgctacaattttaaattttccagt--atatttcacctgttgagtttacgtaggttccaataatcttagtagtttttcccttatatgtgctatgcag-
||||||||| ||||| ||||| ||||||||||| ||  | ||||||||||||||||||||||| || ||||||||||| ||  | ||||||||||||||||||||     |||| |  |||  |       |  || | | ||     |   |   |||   |  | | ||  ||    |  ||  | ||      ||  
AAATCATGCAATTGCTCTCCCAGAAAGAGTTAACCCTACAAGTTTGAGTTTGATTCTTGACTATTGTCGGTTTCATCAAGTCCCAGGGCGCTCAAACAAGgtatgtcgtgatttaagttttgtcttctggcaactccctttttactgctttctctcttctgcttgtttcaggcgtccacctgttgcaagtatagaccatt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211218504|gb|FL448109.1|FL448109
EST:     TGATTCTTGACTACTGCCGGTTTCATCAGGTTACTGGGCGCTCAAACAAG                         GAGCGGAAGTCCTTTGATGAAAAATTTGTTAGGATAGAAACAGAAAGACTC
genomic: TGATTCTTGACTACTGCCGGTTTCATCAGGTTACTGGGCGCTCAAACAAGgtatgctaca ... tgctatgcagGAGCGGAAGTCCTTTGATGAAAAATTTGTTAGGATAGAAACAGAAAGACTC