Sequence
atgc intronic sequence ATGC exonic sequenceGAGGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCACCCGAGGCACGGCTCCCTCGGCTTCCTTCCCAGGAAGCGCTCCTCCCGTCACCGCGGCAAGGgtacgctcgcatctcttactccctctttgttcgcttgccttgtcccgatacgtgtcatctgaaatgttctacccttcaacctttagaacttgaagtatta...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G109677_T07 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os11g06750.1 (Oryza sativa), 5'ss of exon 2
GAGGAGGAG-GGCAGGATGTCGCACCGTAAGTTCGAGCACCCGAGGCACGGCTCCCTCGGCTTCCTTCCCAGGAAGCGCTCCTCCCGTCACCGCGGCAAGGgtacgctcgcatctcttactccctctttgttcgcttgccttgtcccgatacgtgtcatctgaaatgttctacccttcaacctttagaacttgaagt-atta--
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-AGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAGGCACGGATCCCTCGGCTTCCTCCCGAGGAAGCGCTCCTCCCGCCACCGCGGCAAGGgtatgctcac-tcacctactctctctct-ctctctcttttgcttgtgcggtgctgtatttgtagagct-tgcgccttgtatggtagagtagaaacttgttgga
upper sequence: GRMZM2G109677_T07 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA12G36940.1 (Glycine max), 5'ss of exon 2
GAGGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCACCCGAGGCACGGCTCCCTCGGCTTCCTTCCCAGGAAGCGCTCCTCCCGTCACCGCGGCAAGGgtacgctcgcatctcttactccctctttgttcgcttgccttgtcccgatacgtgtc-atctgaaatgttctacccttcaacctttagaacttgaagtatta
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AATTTGGAAAACAAGATGTCTCACCGCAAGTTCGAGCACCCGAGACACGGTTCCCTTGGCTTTCTCCCAAGGAAGCGAGCTTCTCGTCATCGCGGAAAGGgtg-atcctcttttttttgttttgttttgttcgtttctgttgtttactttcagatttaaatgatgttgttaagggttttcttttcagatctaaaaacattt
upper sequence: GRMZM2G109677_T07 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA10G36780.1 (Glycine max), 5'ss of exon 2
GAGGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCACCCGAGGCACGGCTCCCTCGGCTTCCTTCCCAGGAAGCGCTCCTCCCGTCACCGCGGCAAGGgtacgctcgcatctc--ttactccctctttgttcgcttgccttgtcccgatacgtgtcatctgaaatgttctacccttcaacctttagaacttgaagtatta-
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-----GAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaatttattttttaaattatccagtattcatt-acatggttttctgtcttgtgagttcttttaattatcatgaa--tagctgttgtgaatttgcaaagtcaa
upper sequence: GRMZM2G109677_T07 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA20G30810.1 (Glycine max), 5'ss of exon 2
GAGGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCACCCGAGGCACGGCTCCCTCGGCTTCCTTCCCAGGAAGCGCTCCTCCCGTCACCGCGGCAAGGgta-cgctcgcatctcttactccctctttgttcgcttgcct--tgtcccgatacgtgtcatctgaaatgttctacccttcaacctttagaacttgaagtatta-
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GAGGAGAATA--AGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttttttgtcttatgttctttcaattaacataattgctgttgtga-atttctaaagtaaaacaagatgctgttg---tgttaaacatgagtatgccga
upper sequence: GRMZM2G109677_T07 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA09G00280.1 (Glycine max), 5'ss of exon 2
GAGGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCACCCGAGGCACGGCTCCCTCGGCTTCCTTCCCAGGAAGCGCTCCTCCCGTCACCGCGGCAAGGgtacgctcgcatctcttactccc-tctttgttcgcttgcc-ttgtcccgatacgtgtcatctg-aaatgttctacccttcaacctttagaacttgaagtatta
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TGAATTTGGAAAAAGATGTCTCACCGGAAGTTCGAGCACCCGAGACATGGTTCCCTTGGCTTTCTCCCAAGGAAGCGAGCTTCTCGTCATCGCGGAAAGGgtg-atctacattttttgtttgtacctttggatgtttgatactgttcttcatctcgacatttataaatgatgttgcaaagggttttcagatctaaaataac--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211223981|gb|FL295887.1|FL295887EST: CTCCCTCGGCTTCCTTCCCAGGAAGCGCTCCTCCCGCCACCGCGGCAAGG TGAAGTCATTCCCCAGSGGATGACCCCAAGAAGCCTTGCCATCTCACTGCC
genomic: CTCCCTCGGCTTCCTTCCCAGGAAGCGCTCCTCCCGTCACCGCGGCAAGGgtacgctcgc ... gtttttgcagTGAAGTCATTCCCTAG-GGATGACCCCAAGAAGCCTTGCCATCTCACTGCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCACCCGAGGCACGGCTCCCTCGGCTTCCTTCCCAGGAAGCGCTCCTCCCGTCACCGCGGCAAGGgtacgctcgcatctcttactccctctttgttcgcttgccttgtcccgatacgtgtcatctgaaatgttctacccttcaacctttagaacttgaagtatta
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