1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGTTTACGCGCATTGTGGCTCCTCACTTCCGCGCCGCCACCCCTACAGgtgaatataacgaatccgccgccggcgtcatctcctcctcccacctcgactcgccttgctcgccgtcggcggccatttcgtcgccgcgcggcgagccgcccatgttgagctcgcggcggatctgatgggcttgttgtgatctcctgcag
species | Zea mays |
transcript | GRMZM2G109677_T04 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCGCGCCGCCACCCTCTACAG ATAAGGAAGAGGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCACCCGEST: gi|32914060|gb|CF018872.1|CF018872
genomic: CCGCGCCGCCACCC-CTACAGgtgaatataa ... tctcctgcagGTAAGGAAGAGGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCACCCG
EST: GCATTGTGGCTCCTTACTTCCGCGCCGCCACCCCTACAG GTAAGGAAGAGGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCACCCGAEST: gi|211022208|gb|FL268590.1|FL268590
genomic: GCATTGTGGCTCCTCACTTCCGCGCCGCCACCCCTACAGgtgaatataa ... tctcctgcagGTAAGGAAGAGGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCACCCGA
EST: GCTCCTTACTTCCGCGCCGCCACCCCTACAG GTAAGGAAGAGGAGGAGGGCAGGATGTCGCAEST: gi|211173282|gb|FL423155.1|FL423155
genomic: GCTCCTCACTTCCGCGCCGCCACCCCTACAGgtgaatataa ... tctcctgcagGTAAGGAAGAGGAGGAGGGCAGGATGTCGCA
EST: GCATTGTGGCTCCTTACTTCCGCGCCG-CACCCCTACAG GTAAGGAAGAGGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCACCCGA
genomic: GCATTGTGGCTCCTCACTTCCGCGCCGCCACCCCTACAGgtgaatataa ... tctcctgcagGTAAGGAAGAGGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCACCCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTTACGCGCATTGTGGCTCCTCACTTCCGCGCCGCCACCCCTACAGgtgaatataacgaatccgccgccggcgtcatctcctcctcccacctcgactcgccttgctcgccgtcggcggccatttcgtcgccgcgcggcgagccgcccatgttgagctcgcggcggatctgatgggcttgttgtgatctcctgcag
- - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - -CGCCGCCA