1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCCATTTGATGGAAAAGATTGATTCTGAGAATCTGCTACATAGGGCATTCAGTGTGTTCCTTTTCAACTCAAAATATGAGCTGCTACTTCAGgtttgtttttttatttcttgtactctgcatttctatgatgttttttttgtctattttattgcataccaggcaaaggttttaaatttccggtgattgtttt...
species | Zea mays |
transcript | GRMZM2G108285_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGGCATTTAGTGTGTTCCTTTTCAACTCAAAATATGAGCTGCTACTTCAG CAAAGGTCCGCGACAAAGGTTACCTTTCCTTTAGTTTGGACCAATACCTGCEST: gi|6527019|gb|AW216241.1|AW216241
genomic: GGGCATTCAGTGTGTTCCTTTTCAACTCAAAATATGAGCTGCTACTTCAGgtttgttttt ... actcgtgcagCAAAGGTCCGCGACAAAGGTTACCTTTCCTTTAGTTTGGACCAATACCTGC
EST: GGGCATTCAGTGNGTTCCTTTTCAACTCAAAATATGAGCTGCTACTTCAG CAAAGGTCCGCGACAAAGEST: gi|33101212|gb|CF061172.1|CF061172
genomic: GGGCATTCAGTGTGTTCCTTTTCAACTCAAAATATGAGCTGCTACTTCAGgtttgttttt ... actcgtgcagCAAAGGTCCGCGACAAAG
EST: GGGCATTTAGTGTGTTCCTTTTCAACTCAAAATATGAGCTGCTACTTCAG CAAAGGTCCGCGACAAAGGTTACCTTTCCTTTAGTTTGGACCAATACCTGCEST: gi|33100629|gb|CF060589.1|CF060589
genomic: GGGCATTCAGTGTGTTCCTTTTCAACTCAAAATATGAGCTGCTACTTCAGgtttgttttt ... actcgtgcagCAAAGGTCCGCGACAAAGGTTACCTTTCCTTTAGTTTGGACCAATACCTGC
EST: GGGCATTTAGTGTGTTCCTTTTCAACTCAAAATATGAGCTGCTACTTCAG CAAAGGTCCGCGACAAAGGTTACCTTTCCTTTAGTTTGGACCAATACCTGCEST: gi|24765500|gb|CA400659.1|CA400659
genomic: GGGCATTCAGTGTGTTCCTTTTCAACTCAAAATATGAGCTGCTACTTCAGgtttgttttt ... actcgtgcagCAAAGGTCCGCGACAAAGGTTACCTTTCCTTTAGTTTGGACCAATACCTGC
EST: GGGCATTTAGTGTGTTCCTTTTCAACTCAAAATATGAGCTGCTACTTCAG CAAAGGTCCGCGACAAAGGTTACCTTTCCTTTAGTTTGGACCAATACCTGCEST: gi|60358782|gb|DN225755.1|DN225755
genomic: GGGCATTCAGTGTGTTCCTTTTCAACTCAAAATATGAGCTGCTACTTCAGgtttgttttt ... actcgtgcagCAAAGGTCCGCGACAAAGGTTACCTTTCCTTTAGTTTGGACCAATACCTGC
EST: GGGCATTCAGTGTGTTCCTTTTCAACTCAAAATATGAGCTGCTACTTCAG CAAAGGTCCGCGACAAAGGTTACCTTTCCTTTAGTTTGGACCAATACCTGCEST: gi|84977083|gb|DW475505.1|DW475505
genomic: GGGCATTCAGTGTGTTCCTTTTCAACTCAAAATATGAGCTGCTACTTCAGgtttgttttt ... actcgtgcagCAAAGGTCCGCGACAAAGGTTACCTTTCCTTTAGTTTGGACCAATACCTGC
EST: GGGCATTCAGTGTGTTCCTTTTCAACTCAAAATATGAGCTGCTACTTCAG CAAAGGTCCGCGACAAAGGTTACCTTTCCTTTAGTTTGGACCAATACCTGCEST: gi|24770101|gb|CA405230.1|CA405230
genomic: GGGCATTCAGTGTGTTCCTTTTCAACTCAAAATATGAGCTGCTACTTCAGgtttgttttt ... actcgtgcagCAAAGGTCCGCGACAAAGGTTACCTTTCCTTTAGTTTGGACCAATACCTGC
EST: GGGCATTTAGTGTGTTCCTTTTCAACTCAAAATATGAGCTGCTACTTCAG CAAAGGTCCGCGACAAAGGTTACCTTTCCTTTAGTTTGGACCAATACCTGCEST: gi|14203887|gb|BG837564.1|BG837564
genomic: GGGCATTCAGTGTGTTCCTTTTCAACTCAAAATATGAGCTGCTACTTCAGgtttgttttt ... actcgtgcagCAAAGGTCCGCGACAAAGGTTACCTTTCCTTTAGTTTGGACCAATACCTGC
EST: GGGCATTCAGTGTGTTCCTTTTCAACTCAAAATATGAGCTGCTACTTCAG CAAAGGTCCGCGACAAAGGTTACCTTTCCTTTAGTTTGGACCAATACCTGCEST: gi|33101423|gb|CF061383.1|CF061383
genomic: GGGCATTCAGTGTGTTCCTTTTCAACTCAAAATATGAGCTGCTACTTCAGgtttgttttt ... actcgtgcagCAAAGGTCCGCGACAAAGGTTACCTTTCCTTTAGTTTGGACCAATACCTGC
EST: GGGCATTTAGTGTGTTCCTTTTCAACTCAAAATATGAGCTGCTACTTCAG CAAAGGTCCGCGACAAAGGTTACCTTTCCTTTAGTTTGGACCAATACCTGCEST: gi|18659800|gb|BM500528.1|BM500528
genomic: GGGCATTCAGTGTGTTCCTTTTCAACTCAAAATATGAGCTGCTACTTCAGgtttgttttt ... actcgtgcagCAAAGGTCCGCGACAAAGGTTACCTTTCCTTTAGTTTGGACCAATACCTGC
EST: GGGCATTCAGTGTGTTCCTTTTCAACTCAAAATATGAGCTGCTACTTCAG CAAAGGTCCGCGACAAAGGTTACCTTTCCTTTAGTTTGGACCAATACCTGCEST: gi|33100900|gb|CF060860.1|CF060860
genomic: GGGCATTCAGTGTGTTCCTTTTCAACTCAAAATATGAGCTGCTACTTCAGgtttgttttt ... actcgtgcagCAAAGGTCCGCGACAAAGGTTACCTTTCCTTTAGTTTGGACCAATACCTGC
EST: GGGCATTTAGTGTGTTCCTTTTCAACTCAAAATATGAGCTGCTACTTCAG CAAAGGTCCGCGACAAAGGTTACCTTTCCTTTAGTTTGGACCAATACCTGC
genomic: GGGCATTCAGTGTGTTCCTTTTCAACTCAAAATATGAGCTGCTACTTCAGgtttgttttt ... actcgtgcagCAAAGGTCCGCGACAAAGGTTACCTTTCCTTTAGTTTGGACCAATACCTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCATTTGATGGAAAAGATTGATTCTGAGAATCTGCTACATAGGGCATTCAGTGTGTTCCTTTTCAACTCAAAATATGAGCTGCTACTTCAGgtttgtttttttatttcttgtactctgcatttctatgatgttttttttgtctattttattgcataccaggcaaaggttttaaatttccggtgattgtttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT