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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGGACCCCGAGACGGGGTAATCCAATGTTTCATAAAAAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTGgtaagtgtcaacctattgtcttcacttcagaataacaaagtcaatagtcttttgtttgtttgttgaaactcatgtctgtcccatcagttttcaattttgt...

Basic information

species Zea mays
transcript GRMZM2G108228_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G108228_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os04g59130.1 (Oryza sativa), 5'ss of exon 3
CCTGGACCCCGAGACGGGGTAATCCAATGTTTCATAAAAAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTGgtaagtgtcaacctattgtcttcacttcagaataacaaagtcaatagtcttttgtttgtttgttgaaactcatgtctgtcccatcagttttcaattttgt--
|||||||| ||||| || ||||||||||||||||||||||||||||||||||| ||||| || |  |||||| ||| |||||||||||||||||  |       | | | |||||    || |       ||| | |  |  |||   | ||  |||  || | | |     ||| |   || |      
CCTGGACCTCGAGATGGAGTAATCCAATGTTTCATAAAAAGGGACAAATCAAAACTAACTTATCATCTCTACCTGTGCCTTAGCTCTGgtaagttcctgtaatctttttccacttacccattattgctctaatcggcactatttttgatattataacagatctgtttgttggcagata--aactagacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71318795|gb|DR796159.1|DR796159
EST:     AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTG                         GTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCCGCA
genomic: AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTGgtaagtgtca ... gatcttgtagGTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCCGCA
EST: gi|71445229|gb|DR826279.1|DR826279
EST:     AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTG                         GTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCCGCA
genomic: AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTGgtaagtgtca ... gatcttgtagGTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCCGCA
EST: gi|91049386|gb|EB159804.1|EB159804
EST:     AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTG                         GTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAANAGGAGCCGCA
genomic: AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTGgtaagtgtca ... gatcttgtagGTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCCGCA
EST: gi|50332914|gb|CO528040.1|CO528040
EST:     AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTG                         GTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCCGCA
genomic: AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTGgtaagtgtca ... gatcttgtagGTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCCGCA
EST: gi|71765600|gb|DR963537.1|DR963537
EST:     AAGGGACAAATCAAAGCTAACGTATTGGCTCTACTTGTCCCTTAGCTCTG                         GTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCCGCA
genomic: AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTGgtaagtgtca ... gatcttgtagGTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCCGCA
EST: gi|76288559|gb|DV028127.1|DV028127
EST:     AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTG                         GTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCCGCA
genomic: AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTGgtaagtgtca ... gatcttgtagGTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCCGCA
EST: gi|32942208|gb|CF047027.1|CF047027
EST:     ACCGGCTCTACTTGTCCCTTAGCTCTG                         GTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCCGCA
genomic: ACCGGCTCTACTTGTCCCTTAGCTCTGgtaagtgtca ... gatcttgtagGTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCCGCA
EST: gi|148970343|gb|EE021209.2|EE021209
EST:     AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTG                         GTGTGCTTGATGAGAACGGGA
genomic: AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTGgtaagtgtca ... gatcttgtagGTGTGCTTGATGAGAACGGGA
EST: gi|31359011|gb|CD443368.1|CD443368
EST:     AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTG                         GTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCCGCA
genomic: AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTGgtaagtgtca ... gatcttgtagGTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCCGCA
EST: gi|148960184|gb|EE153436.2|EE153436
EST:     AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTG                         GTGTGCTTGATGAGAACGGGAAAGT-CCTGCTAGCAGCGAAAAGG
genomic: AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTGgtaagtgtca ... gatcttgtagGTGTGCTTGATGAGAACGGGAA-GTTCCTGCTAGCAGCGAAAAGG
EST: gi|76021266|gb|DT948436.1|DT948436
EST:     AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTG                         GTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCCGCA
genomic: AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTGgtaagtgtca ... gatcttgtagGTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCCGCA
EST: gi|78111619|gb|DV530016.1|DV530016
EST:     AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTG                         GTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCCGCA
genomic: AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTGgtaagtgtca ... gatcttgtagGTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCCGCA
EST: gi|149090300|gb|EE179604.2|EE179604
EST:     AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTG                         GTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCCGCA
genomic: AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTGgtaagtgtca ... gatcttgtagGTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCCGCA
EST: gi|71442832|gb|DR823882.1|DR823882
EST:     AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTG                         GTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCCGCA
genomic: AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTGgtaagtgtca ... gatcttgtagGTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCCGCA
EST: gi|71766358|gb|DR964295.1|DR964295
EST:     AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTG                         GTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCCGCA
genomic: AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTGgtaagtgtca ... gatcttgtagGTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCCGCA
EST: gi|93283817|gb|EB676081.1|EB676081
EST:     AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTG                         GTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAANAGGAGCCGCA
genomic: AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTGgtaagtgtca ... gatcttgtagGTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCCGCA
EST: gi|148941245|gb|EC886139.2|EC886139
EST:     AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTG                         GTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCCGCA
genomic: AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTGgtaagtgtca ... gatcttgtagGTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCCGCA
EST: gi|148940679|gb|EC885493.2|EC885493
EST:     AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTG                         GTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCCGCA
genomic: AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTGgtaagtgtca ... gatcttgtagGTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCCGCA
EST: gi|50327951|gb|CO523077.1|CO523077
EST:     AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTG                         GTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCCGCA
genomic: AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTGgtaagtgtca ... gatcttgtagGTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCCGCA
EST: gi|211428128|gb|FL358025.1|FL358025
EST:     AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTG                         GTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCCGCA
genomic: AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTGgtaagtgtca ... gatcttgtagGTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCCGCA
EST: gi|32843854|gb|CD983535.1|CD983535
EST:     TACCGGCTCTACTTGTCCCTTAGCTCTG                         GTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCCGCA
genomic: TACCGGCTCTACTTGTCCCTTAGCTCTGgtaagtgtca ... gatcttgtagGTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCCGCA
EST: gi|148959531|gb|EE010853.2|EE010853
EST:     AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTG                         GTGTGCTTGATGAGAACGGGGAAGTTCCTGCTAGCAGCGAAAA
genomic: AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTGgtaagtgtca ... gatcttgtagGTGTGCTTGATGAGAACGGG-AAGTTCCTGCTAGCAGCGAAAA
EST: gi|78111743|gb|DV530140.1|DV530140
EST:     AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTG                         GTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCCGCA
genomic: AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTGgtaagtgtca ... gatcttgtagGTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCCGCA
EST: gi|50332231|gb|CO527357.1|CO527357
EST:     AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTG                         GTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCCGCA
genomic: AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTGgtaagtgtca ... gatcttgtagGTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCCGCA
EST: gi|91049274|gb|EB159692.1|EB159692
EST:     AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTG                         GTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCCGCA
genomic: AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTGgtaagtgtca ... gatcttgtagGTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCCGCA
EST: gi|78113977|gb|DV532366.1|DV532366
EST:     AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTG                         GTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCCGCA
genomic: AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTGgtaagtgtca ... gatcttgtagGTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCCGCA
EST: gi|101387605|gb|EB815817.1|EB815817
EST:     AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTG                         GTGTGCTTGATGAGAACGGGGAGTTCCTGCTAGCAGCGAAAAGGAGCCCGC
genomic: AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTGgtaagtgtca ... gatcttgtagGTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCC-GC
EST: gi|71312297|gb|DR792672.1|DR792672
EST:     AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTG                         GTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCCGCA
genomic: AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTGgtaagtgtca ... gatcttgtagGTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCCGCA
EST: gi|78079710|gb|DV508122.1|DV508122
EST:     AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTG                         GTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCCGCA
genomic: AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTGgtaagtgtca ... gatcttgtagGTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCCGCA
EST: gi|149009205|gb|EE041318.2|EE041318
EST:     AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTG                         GTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCCGCA
genomic: AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTGgtaagtgtca ... gatcttgtagGTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCCGCA
EST: gi|91050137|gb|EB160555.1|EB160555
EST:     AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTG                         GTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAANAGGAGCCGCA
genomic: AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTGgtaagtgtca ... gatcttgtagGTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCCGCA
EST: gi|149082440|gb|EE171627.2|EE171627
EST:     AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTG                         GTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCCGCA
genomic: AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTGgtaagtgtca ... gatcttgtagGTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCCGCA
EST: gi|91871229|gb|EB401309.1|EB401309
EST:     AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTG                         GTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCCGCA
genomic: AAGGGACAAATCAAAGCTAACGTACCGGCTCTACTTGTCCCTTAGCTCTGgtaagtgtca ... gatcttgtagGTGTGCTTGATGAGAACGGGAAGTTCCTGCTAGCAGCGAAAAGGAGCCGCA