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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAGgtatactctctcaccataatttgctcgatttggttgtgcaatgagatcgtattctgtgacggtggtttaaggttaatggaacgagcacgaaacggaaagt...

Basic information

species Zea mays
transcript GRMZM2G107639_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G107639_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g08270.1 (Oryza sativa), 5'ss of exon 3
ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAGgtatactctctcaccataatttgctcgatttggttgtgcaatgagatcgtattctgtgacggtggtttaaggttaatgg-aacgagcacgaaacg--gaaagt---
|| || ||| |||| ||||||  |||||||||||||||||||||||||||||     |  | |  |||||  |    ||   ||| ||||||    || |  ||||   ||| ||| | |  | |   || |||   |    |  |   ||   
ATGCAGGAATTGCTTCGAGGGAACAAGGATGTGATGTCGCTTGCGCAGgtat-----cggatcgcaatttctttcggttatctgtccaatgattgtgtgtg-tgtgtgtgtgttttcatgagagtaccaatgagtttgtgttgttgttggtact
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211470276|gb|FL336876.1|FL336876
EST:     ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG                         GGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
genomic: ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAGgtatactctc ... ctgaatgcagGGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
EST: gi|211537775|gb|FL336421.1|FL336421
EST:     ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG                         GGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
genomic: ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAGgtatactctc ... ctgaatgcagGGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
EST: gi|211528508|gb|FL328866.1|FL328866
EST:     ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG                         GGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGGATAAGATCGAAAA
genomic: ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAGgtatactctc ... ctgaatgcagGGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGG-ATAAGATCGAAAA
EST: gi|148932368|gb|EC876010.2|EC876010
EST:     ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG                         GGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
genomic: ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAGgtatactctc ... ctgaatgcagGGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
EST: gi|211529039|gb|FL347042.1|FL347042
EST:     ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG                         GGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
genomic: ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAGgtatactctc ... ctgaatgcagGGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
EST: gi|211307789|gb|FL085770.1|FL085770
EST:     ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG                         GGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
genomic: ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAGgtatactctc ... ctgaatgcagGGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
EST: gi|211325052|gb|FL357886.1|FL357886
EST:     ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG                         GGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
genomic: ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAGgtatactctc ... ctgaatgcagGGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
EST: gi|211519775|gb|FL337741.1|FL337741
EST:     ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG                         GGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAWAAG
genomic: ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAGgtatactctc ... ctgaatgcagGGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
EST: gi|211329406|gb|FL358391.1|FL358391
EST:     ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG                         GGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
genomic: ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAGgtatactctc ... ctgaatgcagGGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
EST: gi|211526539|gb|FL366365.1|FL366365
EST:     ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG                         GGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
genomic: ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAGgtatactctc ... ctgaatgcagGGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
EST: gi|91877308|gb|EB407265.1|EB407265
EST:     ATACAAGAACTGCTCCCAGGGGCCAAGGATGTGATGTCGCTTGCGCAG                         GGAGTTGTTTACTGGCAACCTCC
genomic: ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAGgtatactctc ... ctgaatgcagGGAGTTGTTTACTGGCAACCTCC
EST: gi|67030337|gb|CO459086.1|CO459086
EST:     ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG                         GGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
genomic: ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAGgtatactctc ... ctgaatgcagGGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
EST: gi|211061387|gb|FL333865.1|FL333865
EST:     ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG                         GGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
genomic: ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAGgtatactctc ... ctgaatgcagGGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
EST: gi|211262318|gb|FL317280.1|FL317280
EST:     ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG                         GGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
genomic: ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAGgtatactctc ... ctgaatgcagGGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
EST: gi|211237919|gb|FL362192.1|FL362192
EST:     ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG                         GGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
genomic: ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAGgtatactctc ... ctgaatgcagGGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
EST: gi|211525076|gb|FL312407.1|FL312407
EST:     ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG                         GGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
genomic: ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAGgtatactctc ... ctgaatgcagGGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
EST: gi|148990980|gb|EE032414.2|EE032414
EST:     ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG                         GGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
genomic: ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAGgtatactctc ... ctgaatgcagGGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
EST: gi|149037081|gb|EE155270.2|EE155270
EST:     ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG                         GGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
genomic: ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAGgtatactctc ... ctgaatgcagGGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
EST: gi|211023084|gb|FL313921.1|FL313921
EST:     ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG                         GGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
genomic: ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAGgtatactctc ... ctgaatgcagGGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
EST: gi|211213774|gb|FL353738.1|FL353738
EST:     ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG                         GGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
genomic: ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAGgtatactctc ... ctgaatgcagGGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
EST: gi|148931036|gb|EC873618.2|EC873618
EST:     ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG                         GGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
genomic: ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAGgtatactctc ... ctgaatgcagGGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
EST: gi|211305634|gb|FL309433.1|FL309433
EST:     ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG                         GGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
genomic: ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAGgtatactctc ... ctgaatgcagGGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
EST: gi|211448663|gb|FL323020.1|FL323020
EST:     ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG                         GGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
genomic: ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAGgtatactctc ... ctgaatgcagGGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
EST: gi|211362582|gb|FL351447.1|FL351447
EST:     ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG                         GGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
genomic: ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAGgtatactctc ... ctgaatgcagGGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
EST: gi|211136252|gb|FL346220.1|FL346220
EST:     ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG                         GGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
genomic: ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAGgtatactctc ... ctgaatgcagGGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
EST: gi|211320586|gb|FL352820.1|FL352820
EST:     ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG                         GGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
genomic: ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAGgtatactctc ... ctgaatgcagGGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
EST: gi|76286951|gb|DV026519.1|DV026519
EST:     ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG                         GGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
genomic: ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAGgtatactctc ... ctgaatgcagGGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
EST: gi|211162581|gb|FL363060.1|FL363060
EST:     ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG                         GGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
genomic: ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAGgtatactctc ... ctgaatgcagGGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
EST: gi|211126683|gb|FL312966.1|FL312966
EST:     ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG                         GGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
genomic: ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAGgtatactctc ... ctgaatgcagGGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
EST: gi|19351033|gb|BM895565.1|BM895565
EST:     ATACAAGAACTGCTCCGAGGGGCCAAGGACGTGATGTCGCTTGCGCAG                         GGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
genomic: ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAGgtatactctc ... ctgaatgcagGGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
EST: gi|211010784|gb|FL361163.1|FL361163
EST:     ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG                         GGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
genomic: ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAGgtatactctc ... ctgaatgcagGGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
EST: gi|211111425|gb|FL330322.1|FL330322
EST:     ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG                         GGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
genomic: ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAGgtatactctc ... ctgaatgcagGGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
EST: gi|211135049|gb|FL315824.1|FL315824
EST:     ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG                         GGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
genomic: ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAGgtatactctc ... ctgaatgcagGGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
EST: gi|148963140|gb|EE014107.2|EE014107
EST:     ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG                         GGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
genomic: ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAGgtatactctc ... ctgaatgcagGGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
EST: gi|211260539|gb|FL346343.1|FL346343
EST:     ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG                         GGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
genomic: ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAGgtatactctc ... ctgaatgcagGGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
EST: gi|148950038|gb|EC895570.2|EC895570
EST:     ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG                         GGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
genomic: ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAGgtatactctc ... ctgaatgcagGGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
EST: gi|149112179|gb|EE295100.2|EE295100
EST:     ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG                         GGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
genomic: ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAGgtatactctc ... ctgaatgcagGGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
EST: gi|149084340|gb|EE173781.2|EE173781
EST:     ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG                         GGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
genomic: ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAGgtatactctc ... ctgaatgcagGGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
EST: gi|211467483|gb|FL327943.1|FL327943
EST:     ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG                         GGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
genomic: ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAGgtatactctc ... ctgaatgcagGGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
EST: gi|148947797|gb|EC893285.2|EC893285
EST:     ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG                         GGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
genomic: ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAGgtatactctc ... ctgaatgcagGGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
EST: gi|211320872|gb|FL365292.1|FL365292
EST:     ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG                         GGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
genomic: ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAGgtatactctc ... ctgaatgcagGGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
EST: gi|211171826|gb|FL323734.1|FL323734
EST:     ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG                         GGAGTTGTTTACTGGCAACCTCCCGAGTC
genomic: ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAGgtatactctc ... ctgaatgcagGGAGTTGTTTACTGGCAACCTCCCGAGTC
EST: gi|211391856|gb|FL357117.1|FL357117
EST:     ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG                         GGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
genomic: ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAGgtatactctc ... ctgaatgcagGGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
EST: gi|211026505|gb|FL356245.1|FL356245
EST:     ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG                         GGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
genomic: ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAGgtatactctc ... ctgaatgcagGGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
EST: gi|50325408|gb|CO520534.1|CO520534
EST:     ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG                         GGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
genomic: ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAGgtatactctc ... ctgaatgcagGGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
EST: gi|211050425|gb|FL364299.1|FL364299
EST:     ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG                         GGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG
genomic: ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAGgtatactctc ... ctgaatgcagGGAGTTGTTTACTGGCAACCTCCCGAGTCAGCTATGGATAAGATCGAAAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAGgtatactctctcaccataatttgctcgatttggttgtgcaatgagatcgtattctgtgacggtggtttaaggttaatggaacgagcacgaaacggaaagt

- - AAGAAC
- - - - - - - - - - - -  AGGATG