Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTATGGATAAGATCGAAAAGATCATCAGGGAACCAATAGTCAGTAAATATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttcttttttatcatagaatatatatactttgcccatacactgactaagcagggcatgctcctgagtccaaaggttccgaaaatctttttgttctc...

Basic information

species Zea mays
transcript GRMZM2G107639_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G107639_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g08270.4 (Oryza sativa), 5'ss of exon 4
AGCTATGGATAAGATCGAAAAGATCATCAGGGAACCAATAGTCAGTAAATATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttcttttttatcatagaatatatatactttgcccatacactgactaagcagggcatgctcctgagtccaaag--gttccgaaaatctttttgttctc
||||||| |||||||  || | ||  |  ||||||||  | ||||||||||||| ||||||||||| |||||||| || ||||||||||||||||| ||||||| || |   ||   ||    || ||| |   |  ||||   |    | | || | | | |   | |   |||||   || | |           | |  
AGCTATGAATAAGATTAAAGAAATTGTATGGGAACCATCAATCAGTAAATATGGCTCTGATGATGGTCTTCCTGAACTCCGAGAAGCACTTCTCGAGAAGgtaatttttcaattgggatttgttagata-atggtttccatggcccatgttatcaagccttcccagttatcacaaagcaattaccatgtgagacaaatgca-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148932368|gb|EC876010.2|EC876010
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|211260539|gb|FL346343.1|FL346343
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAACAAGCTTACCAAATCATCTGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|78110709|gb|DV529107.1|DV529107
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|67030337|gb|CO459086.1|CO459086
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAACAAGCTTACCAAATCATCTGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|211010784|gb|FL361163.1|FL361163
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAACAAGCTTACCAAATCATCTGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|148947797|gb|EC893285.2|EC893285
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|211305764|gb|FL085757.1|FL085757
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAACAAGCTTACCAAATCATCTGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|211307794|gb|FL085775.1|FL085775
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAACAAGCTTACCAAATCATCTGTCATGGGTCACTGCTGG
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGG-TCACTGCTGG
EST: gi|211307792|gb|FL085773.1|FL085773
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAACAAGCTTACCAAATCATCAGTCATGGTCAC
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCAC
EST: gi|211307790|gb|FL085771.1|FL085771
EST:     TGGTTCTGATGAATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAACAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
genomic: TGGTTCTGATGA-TGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|211111425|gb|FL330322.1|FL330322
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAACAAGCTTACCAAATCATCTGTCATGGTCACTKCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|211305768|gb|FL085761.1|FL085761
EST:     ATGGTTCTGATGATAGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAACAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|211305765|gb|FL085758.1|FL085758
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAA-G                         CTAAGCAGAGAGAACAAGCTTACCA
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCA
EST: gi|211307789|gb|FL085770.1|FL085770
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAACAAGCTTACCAAATCATCTGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|148963140|gb|EE014107.2|EE014107
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|149112179|gb|EE295100.2|EE295100
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|211307791|gb|FL085772.1|FL085772
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAACAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|211305776|gb|FL085769.1|FL085769
EST:     ATGGTTCTGATGATAGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAA-G                         CTAAGCAGAGAGAACAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|149037081|gb|EE155270.2|EE155270
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|211305763|gb|FL085756.1|FL085756
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAACAAGCTTACCAAATCATCTGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|149084340|gb|EE173781.2|EE173781
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|211305774|gb|FL085767.1|FL085767
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAA
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAA
EST: gi|211305772|gb|FL085765.1|FL085765
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAACAAGCTTACCAAATCATCTGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|76286951|gb|DV026519.1|DV026519
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|50325408|gb|CO520534.1|CO520534
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|148990980|gb|EE032414.2|EE032414
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|211305766|gb|FL085759.1|FL085759
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAACAAGCTTACCAAATCATCTGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|211307793|gb|FL085774.1|FL085774
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAACAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|149014921|gb|EE044649.2|EE044649
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|211448663|gb|FL323020.1|FL323020
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAACAAGCTTACCAAATCATCTGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|211305634|gb|FL309433.1|FL309433
EST:     TGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGGAAAAG                         CTAAGCAGAGAGAACAAGCTTACCAAATCATCTGTCATGGTCACTGCTGG
genomic: TGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCG-AAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGG
EST: gi|211305773|gb|FL085766.1|FL085766
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAACAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|211526539|gb|FL366365.1|FL366365
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAACAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|211307795|gb|FL085776.1|FL085776
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAACAAGCTTACCAAATCATCTGTCATGGTC
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTC
EST: gi|211325052|gb|FL357886.1|FL357886
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAACAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|211305762|gb|FL085755.1|FL085755
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAACAAGCTTACCAAATCATCTGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|211305775|gb|FL085768.1|FL085768
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAACAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|211305771|gb|FL085764.1|FL085764
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAACAAGCTTACCAAATCATCTGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|148931036|gb|EC873618.2|EC873618
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 46 (upstream exon), 45 (downstream exon)
Score: 142

AGCTATGGATAAGATCGAAAAGATCATCAGGGAACCAATAGTCAGTAAATATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAG


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 228

AGCTATGGATAAGATCGAAAAGATCATCAGGGAACCAATAGTCAGTAAATATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 255

AGCTATGGATAAGATCGAAAAGATCATCAGGGAACCAATAGTCAGTAAATATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 692

AGCTATGGATAAGATCGAAAAGATCATCAGGGAACCAATAGTCAGTAAATATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCTATGGATAAGATCGAAAAGATCATCAGGGAACCAATAGTCAGTAAATATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttcttttttatcatagaatatatatactttgcccatacactgactaagcagggcatgctcctgagtccaaaggttccgaaaatctttttgttctc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC