1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GAAGAATTCCAGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTCGCCAATCGGgtatgcatctgcttggcaactatactcatttgaatttcatcactattgtattttgctttatgcactattgccatcagttaaattgacatgaaactggccttgcag
species | Zea mays |
transcript | GRMZM2G107575_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTCGCCAATCGG ATATTTGACCTTTTCGATGTCAAGAAAAGGGGTGTCATTGATTTTGGTGACEST: gi|86468277|gb|DY234647.1|DY234647
genomic: AGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTCGCCAATCGGgtatgcatct ... ggccttgcagATATTTGACCTTTTCGATGTCAAGAAAAGGGGTGTCATTGATTTTGGTGAC
EST: AGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTCGCCAATCGG ATATTTGACCTTTTCGATGTCAAGAAAAEST: gi|149079633|gb|EE168627.2|EE168627
genomic: AGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTCGCCAATCGGgtatgcatct ... ggccttgcagATATTTGACCTTTTCGATGTCAAGAAAA
EST: AGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTCGCCAATCGG ATATTTGACCTTTTCGATGTCAAGAAAAGGGGTGTCATTGATTTTGGTGACEST: gi|101388735|gb|EB816351.1|EB816351
genomic: AGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTCGCCAATCGGgtatgcatct ... ggccttgcagATATTTGACCTTTTCGATGTCAAGAAAAGGGGTGTCATTGATTTTGGTGAC
EST: AGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTCGCCAATCGG ATATTTGACCTTTTCGATGTCAAGAAAAGGGGTGTCATTGATTTTGGTGACEST: gi|91053272|gb|EB163690.1|EB163690
genomic: AGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTCGCCAATCGGgtatgcatct ... ggccttgcagATATTTGACCTTTTCGATGTCAAGAAAAGGGGTGTCATTGATTTTGGTGAC
EST: AGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTCGCCAATCGG ATATTTGACCTTTTCGATGTCAAGAAAAGGGGTGTCATTGATTTTGGTGACEST: gi|78085933|gb|DV514326.1|DV514326
genomic: AGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTCGCCAATCGGgtatgcatct ... ggccttgcagATATTTGACCTTTTCGATGTCAAGAAAAGGGGTGTCATTGATTTTGGTGAC
EST: AGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTCGCCAATCGG ATATTTGACCTTTTCGATGTCAAGAAAAGGGGTGTCATTGATTTTGGTGACEST: gi|14203857|gb|BG837534.1|BG837534
genomic: AGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTCGCCAATCGGgtatgcatct ... ggccttgcagATATTTGACCTTTTCGATGTCAAGAAAAGGGGTGTCATTGATTTTGGTGAC
EST: GCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTCGCCAATCGG ATATTTGACCTTTTCGATGTCAAGAAAAGGGGTGTCATTGATTTTGGTGACEST: gi|211199934|gb|FL305445.1|FL305445
genomic: GCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTCGCCAATCGGgtatgcatct ... ggccttgcagATATTTGACCTTTTCGATGTCAAGAAAAGGGGTGTCATTGATTTTGGTGAC
EST: AGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTCGCCAATCGG ATATTTGACCTTTTCGATGTCAAGAAAAGGGGTGTCATTGATTTTGGTGACEST: gi|149016909|gb|EE045638.2|EE045638
genomic: AGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTCGCCAATCGGgtatgcatct ... ggccttgcagATATTTGACCTTTTCGATGTCAAGAAAAGGGGTGTCATTGATTTTGGTGAC
EST: AGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTCGCCAATCGG ATATTTGACCTTTTCGATGTCAAGAAAAGGGGTGTCATTGATTTTGGTGACEST: gi|211202489|gb|FL305452.1|FL305452
genomic: AGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTCGCCAATCGGgtatgcatct ... ggccttgcagATATTTGACCTTTTCGATGTCAAGAAAAGGGGTGTCATTGATTTTGGTGAC
EST: AGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTCGCCAATCGG ATATTTGACCTTTTCGATGTCAAGAAAAGGG-TGTCATTGATTTTGGTGACEST: gi|76018012|gb|DT945182.1|DT945182
genomic: AGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTCGCCAATCGGgtatgcatct ... ggccttgcagATATTTGACCTTTTCGATGTCAAGAAAAGGGGTGTCATTGATTTTGGTGAC
EST: AGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTCGCCAATCGG ATATTTGACCTTTTCGATGTCAAGAAAAGGGGTGTCATTGATTTTGGTGACEST: gi|71427887|gb|DR808937.1|DR808937
genomic: AGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTCGCCAATCGGgtatgcatct ... ggccttgcagATATTTGACCTTTTCGATGTCAAGAAAAGGGGTGTCATTGATTTTGGTGAC
EST: AGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTCGCCAATCGG ATATTTGACCTTTTCGATGTCAAGAAAAGGGGTGTCATTGATTTTGGTGACEST: gi|20208081|gb|BQ134170.1|BQ134170
genomic: AGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTCGCCAATCGGgtatgcatct ... ggccttgcagATATTTGACCTTTTCGATGTCAAGAAAAGGGGTGTCATTGATTTTGGTGAC
EST: AGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTCGCCAATCGG ATATTTGACCTTTTCGATGTCAAGAAAAGGGGTGTCATTGATTCTGGTGACEST: gi|211199933|gb|FL305444.1|FL305444
genomic: AGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTCGCCAATCGGgtatgcatct ... ggccttgcagATATTTGACCTTTTCGATGTCAAGAAAAGGGGTGTCATTGATTTTGGTGAC
EST: CTAGCACTATTNTAAGAATCAGAGGAAAGAAAATCCTTTTCGCCAATCGG ATATTTGACCTTTTTCGATGTCEST: gi|211199938|gb|FL305449.1|FL305449
genomic: CTAGCACTATT-TAAGAATCAGAGGAAAGAAAATC-TTTTCGCCAATCGGgtatgcatct ... ggccttgcagATATTTGACCTTTT-CGATGTC
EST: AGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTCGCCAATCGG ATATT-GACCTTTTCGATGTCAAGAAAAGGGGTGTCATTGAEST: gi|26456204|gb|CA827787.1|CA827787
genomic: AGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTCGCCAATCGGgtatgcatct ... ggccttgcagATATTTGACCTTTTCGATGTCAAGAAAAGGGGTGTCATTGA
EST: AGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTCGCCAATCGG ATATTTGACCTTTTCGATGTCAAGAAAAGGGGTGTCATTGATTTTGGEST: gi|91052665|gb|EB163083.1|EB163083
genomic: AGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTCGCCAATCGGgtatgcatct ... ggccttgcagATATTTGACCTTTTCGATGTCAAGAAAAGGGGTGTCATTGATTTTGG
EST: AGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTCGCCAATCGG ATATTTGACCTTTTCGATGTCAAGAAAAGGGGTGTCATTGATTTTGGTGACEST: gi|71317611|gb|DR795553.1|DR795553
genomic: AGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTCGCCAATCGGgtatgcatct ... ggccttgcagATATTTGACCTTTTCGATGTCAAGAAAAGGGGTGTCATTGATTTTGGTGAC
EST: AGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTCGCCAATCGG ATATTTGACCTTTTCGATGTCAAGAAAAGGGGTGTCATTGATTTTGGTGAC
genomic: AGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTCGCCAATCGGgtatgcatct ... ggccttgcagATATTTGACCTTTTCGATGTCAAGAAAAGGGGTGTCATTGATTTTGGTGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGAATTCCAGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTCGCCAATCGGgtatgcatctgcttggcaactatactcatttgaatttcatcactattgtattttgctttatgcactattgccatcagttaaattgacatgaaactggccttgcag
- - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - AAGAAA