1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AGTTGATCCATTGGTCAATCTCATGAAAGTTGAGAAGGTTCCGGATTCTACCTATGATATGATTGGAGGCCTTGACCAGCAAATTAAAGAGATCAAAGAGgtttgttttgaactaaaaagcactgtcattaaaatatgcacattctgatttgtgaactcaactttcag
species | Zea mays |
transcript | GRMZM2G107362_T04 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCTATGATATGATTGGAGGCCTTGACCAGCAAATTAAAGAGATCAAAGAG GTCATTGAGCTTCCAATCAAACATCTGGAACTGTTTGAGAGCCTTGGAATTEST: gi|32837479|gb|CD977157.1|CD977157
genomic: CCTATGATATGATTGGAGGCCTTGACCAGCAAATTAAAGAGATCAAAGAGgtttgttttg ... caactttcagGTCATTGAGCTTCCAATCAAACATCCGGAACTGTTTGAGAGCCTTGGAATT
EST: CCTATGATATGATTGGAGGCCTTGACCAGCAAATTAAAGAGATCAAAGAG GTCATTGAGCTTCCAATCAAACATCTGGAACTGTTTGAGAGCCTTGGAATTEST: gi|32846543|gb|CD986224.1|CD986224
genomic: CCTATGATATGATTGGAGGCCTTGACCAGCAAATTAAAGAGATCAAAGAGgtttgttttg ... caactttcagGTCATTGAGCTTCCAATCAAACATCCGGAACTGTTTGAGAGCCTTGGAATT
EST: CCTATGATATGATTGGAGGCCTTGACCAGCAAATTAAAGAGATCAAAGAG GTCATTGAGCTTCCAATCAAACATCCGGAACTGTTTGAGAGCCTTGGAATTEST: gi|32928502|gb|CF033314.1|CF033314
genomic: CCTATGATATGATTGGAGGCCTTGACCAGCAAATTAAAGAGATCAAAGAGgtttgttttg ... caactttcagGTCATTGAGCTTCCAATCAAACATCCGGAACTGTTTGAGAGCCTTGGAATT
EST: CCTATGATATGATTGGAGGCCTTGACCAGCAAATTAAAGAGATCAAAGAG GTCATTGAGCTTCCAATCAAACATCCGGAACTGTTTGAGAGCCTTGGAATTEST: gi|32848420|gb|CD988101.1|CD988101
genomic: CCTATGATATGATTGGAGGCCTTGACCAGCAAATTAAAGAGATCAAAGAGgtttgttttg ... caactttcagGTCATTGAGCTTCCAATCAAACATCCGGAACTGTTTGAGAGCCTTGGAATT
EST: CCTATGATATGATTGGAGGCCTTGACCAGCAAATTAAAGAGATCAAAGAG GTCATTGAGCTTCCAATCAAACATCCGGAACTGTTTGAGAGCCTTGGAATTEST: gi|60398970|gb|DN231786.1|DN231786
genomic: CCTATGATATGATTGGAGGCCTTGACCAGCAAATTAAAGAGATCAAAGAGgtttgttttg ... caactttcagGTCATTGAGCTTCCAATCAAACATCCGGAACTGTTTGAGAGCCTTGGAATT
EST: CCTATGATATGATTGGAGGCCTTGACCAGCAAATTAAAGAGATCAAAGAG GTCATTGAGCTTCCAATCAAACATCCGGAACTGTTTGAGAGCCTTGGAATTEST: gi|32836218|gb|CD975896.1|CD975896
genomic: CCTATGATATGATTGGAGGCCTTGACCAGCAAATTAAAGAGATCAAAGAGgtttgttttg ... caactttcagGTCATTGAGCTTCCAATCAAACATCCGGAACTGTTTGAGAGCCTTGGAATT
EST: CCTATGATATGATTGGAGGCCTTGACCAGCAAATTAAAGAGATCAAAGAG GTCATTGAGCTTCCAATCAAACATCTGGAACTGTTTGAGAGCCTTGGAATTEST: gi|32836397|gb|CD976075.1|CD976075
genomic: CCTATGATATGATTGGAGGCCTTGACCAGCAAATTAAAGAGATCAAAGAGgtttgttttg ... caactttcagGTCATTGAGCTTCCAATCAAACATCCGGAACTGTTTGAGAGCCTTGGAATT
EST: CCTATGATATGATTGGAGGCCTTGACCAGCAAATTAAAGAGATCAAAGAG GTCATTGAGCTTCCAATCAAACATCTGGAACTGTTTGAGAGCCTTGGAATT
genomic: CCTATGATATGATTGGAGGCCTTGACCAGCAAATTAAAGAGATCAAAGAGgtttgttttg ... caactttcagGTCATTGAGCTTCCAATCAAACATCCGGAACTGTTTGAGAGCCTTGGAATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTTGATCCATTGGTCAATCTCATGAAAGTTGAGAAGGTTCCGGATTCTACCTATGATATGATTGGAGGCCTTGACCAGCAAATTAAAGAGATCAAAGAGgtttgttttgaactaaaaagcactgtcattaaaatatgcacattctgatttgtgaactcaactttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA