1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ACAACGTGCAACTGCATTTGGTCTTATGAAAATTGATGATGAAGGGAGGATAGTTGAGTTCGCAGAAAAACCAAAAGGAGAGAAGCTGAGATCAATGATGgtacaaatgtgataaactttttgaccctagttcttatgtctcctgattgttagagctccttttgcgattgcattttttcagttaagttttgcttgttttaccttttcag
species | Zea mays |
transcript | GRMZM2G106213_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TAGTTGAGTTTGCAG-CTAACCAAAAGGAGAGAAGCTGAGATCAATGATG GTAGACACCACTATATTGGGCCTTGATCCTGAAAGGGCCAAAGAACTGCCTEST: gi|32933002|gb|CF037814.1|CF037814
genomic: TAGTTGAGTTCGCAGAAAAACCAAAAGGAGAGAAGCTGAGATCAATGATGgtacaaatgt ... accttttcagGTAGACACCACTATATTGGGCCTTGATCCTGAAAGGGCCAAAGAACTGCCT
EST: TAGTTGAGTTTGCAGAAAAACCAAAAGGAGAGAAGCTGAGATCAATGATG GTAGACACCACTATATTGGGCCTTGATCCTGAAAGGGCCAAAGAACTGCCTEST: gi|67042108|gb|CO468363.1|CO468363
genomic: TAGTTGAGTTCGCAGAAAAACCAAAAGGAGAGAAGCTGAGATCAATGATGgtacaaatgt ... accttttcagGTAGACACCACTATATTGGGCCTTGATCCTGAAAGGGCCAAAGAACTGCCT
EST: TAGTTGAGTTTGCAGAAAAACCAAAAGGAGAGAAGCTGAGATCAATGATG GTAGACACCACTATATTGGGCCTTGATCCTGAAAGGGCCAAAGAACTGCCTEST: gi|31356252|gb|CD440609.1|CD440609
genomic: TAGTTGAGTTCGCAGAAAAACCAAAAGGAGAGAAGCTGAGATCAATGATGgtacaaatgt ... accttttcagGTAGACACCACTATATTGGGCCTTGATCCTGAAAGGGCCAAAGAACTGCCT
EST: AGGTTGAGTTTGCAGAAAAACCAAAAGGAGAGAAGCTGAGATCAATGATG GTAGACACCACTATATTGGGCCTTGATCCTGAAAGGGCCAAAGAACTGCCTEST: gi|211466744|gb|FL411592.1|FL411592
genomic: AG-TTGAGTTCGCAGAAAAACCAAAAGGAGAGAAGCTGAGATCAATGATGgtacaaatgt ... accttttcagGTAGACACCACTATATTGGGCCTTGATCCTGAAAGGGCCAAAGAACTGCCT
EST: TAGTTGAGTTTGCAGAAAAACCAAAAGGAGAGAAGCTGAGATCAATGATG GTAGACACCACTATATTGGGCCTTGATCCTGAAAGGGCCAAAGAACTGCCTEST: gi|6564057|gb|AW231679.1|AW231679
genomic: TAGTTGAGTTCGCAGAAAAACCAAAAGGAGAGAAGCTGAGATCAATGATGgtacaaatgt ... accttttcagGTAGACACCACTATATTGGGCCTTGATCCTGAAAGGGCCAAAGAACTGCCT
EST: TAGTTGAGTTTGCAGAAAAACCAAAAGGAGAGAAGCTGAGATCAATGATG GTAGACACCACTATATTGGGCCTTGATCCTGAAAGGGCCAAAGAACTGCCT
genomic: TAGTTGAGTTCGCAGAAAAACCAAAAGGAGAGAAGCTGAGATCAATGATGgtacaaatgt ... accttttcagGTAGACACCACTATATTGGGCCTTGATCCTGAAAGGGCCAAAGAACTGCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAACGTGCAACTGCATTTGGTCTTATGAAAATTGATGATGAAGGGAGGATAGTTGAGTTCGCAGAAAAACCAAAAGGAGAGAAGCTGAGATCAATGATGgtacaaatgtgataaactttttgaccctagttcttatgtctcctgattgttagagctccttttgcgattgcattttttcagttaagttttgcttgttttaccttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA