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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTAACTGGTATTCGTCCATTAACTAGATCGTCTGCTGCTAATTTGGCACTTCAGCCAAAGCTCTCTAGTAGCGCACACCGTTTCAATTCAATGGTTCAGgtagttgtcacctcttacggttaaattacgagaatgaatgtacctttttgttgtgttcaaacagatgataataatcattttttaaatcttttatcaacaa...

Basic information

species Zea mays
transcript GRMZM2G105652_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G105652_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os07g10110.1 (Oryza sativa), 5'ss of exon 3
CCTAACTGGTATTCGTCCATTAACTAGATCGTCTGCTGCTAATTTGGCACTTCAGCCAAAGCTCTCTAGTAGCGCACACCGTTTCAATTCAATGGTTCAGgtagttgtc--acctcttacggttaaattacgagaatgaatgtacctttttgttgtgttcaaacagatgataataat-cattttttaaatcttttatcaacaa
|| |||||| |||||||| ||| ||||||| ||||||||||||||||| ||||||||||||||||| |  || || || ||||| || || |||||||||||| | ||   | | |||| |||| ||  |    |||  || |  || ||| |  ||||||   |  ||||  | ||  || | |   | ||| ||||     
CCCAACTGGCATTCGTCCTTTAGCTAGATCATCTGCTGCTAATTTGGCTCTTCAGCCAAAGCTCTCCAACAGTGCTCATCGTTTTAACTCGATGGTTCAGgtaatggttttatcccttatggttgaacaatactaattgatcttactatttttcttgttcagcaaagtgatggtgatatatctctatgagcttgtatctg---