1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GACGCCGACTTCCAGCCCGACCCGGACTACCTCAAGCGCACCATCCCCTACCTCGTCCACAACCCGGAGATCGCCCTCGTCCAGGCGCGCTGGAGATTCGgtcagtatgccctaccctaccaccaccttccgtgcatttccattcatttcgtcgttcatcattaagtaagtatttgtatttaccgtgctctttgttgccg...
species | Zea mays |
transcript | GRMZM2G105631_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCTCGTCCACAACCCGGAGATCGCCCTCGTCCAGGCGCGCTGGAGATTCG TGAACGCGGACGAGTGCCTGATGACGAGGATGCAGGAGATGTCCCTGGACTEST: gi|37416499|gb|CF645899.1|CF645899
genomic: CCTCGTCCACAACCCGGAGATCGCCCTCGTCCAGGCGCGCTGGAGATTCGgtcagtatgc ... tggcgaccagTGAACGCGGACGAGTGCCTGATGACGAGGATGCAGGAGATGTCCCTGGACT
EST: CCTCGTCCACAACCCGGAGATCGCCCTCGTCCAGGCGCGCTGGAGATTCG TGAACGCGGACGAGTGCCTGATGACGAGGATGCAGGAGATGTCCCTGGACTEST: gi|101389269|gb|EB816589.1|EB816589
genomic: CCTCGTCCACAACCCGGAGATCGCCCTCGTCCAGGCGCGCTGGAGATTCGgtcagtatgc ... tggcgaccagTGAACGCGGACGAGTGCCTGATGACGAGGATGCAGGAGATGTCCCTGGACT
EST: CTCGTCCACAACCCGGAGATCGCCCTCGTCCAGGCGCGCTGGAGATTTCG TGA-CGCGGACGAGTGCCTGATGACGAGGATGCAGGAGATGTCCCTGGACEST: gi|71330488|gb|DR802010.1|DR802010
genomic: CTCGTCCACAACCCGGAGATCGCCCTCGTCCAGGCGCGCTGGAGATT-CGgtcagtatgc ... tggcgaccagTGAACGCGGACGAGTGCCTGATGACGAGGATGCAGGAGATGTCCCTGGAC
EST: GTCCAGGCGCGCTGGAGATTCG TGAACGCGGACGAGTGCCTGATGACGAGGATGCAGGAGATGTCCCTGGACT
genomic: GTCCAGGCGCGCTGGAGATTCGgtcagtatgc ... tggcgaccagTGAACGCGGACGAGTGCCTGATGACGAGGATGCAGGAGATGTCCCTGGACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACGCCGACTTCCAGCCCGACCCGGACTACCTCAAGCGCACCATCCCCTACCTCGTCCACAACCCGGAGATCGCCCTCGTCCAGGCGCGCTGGAGATTCGgtcagtatgccctaccctaccaccaccttccgtgcatttccattcatttcgtcgttcatcattaagtaagtatttgtatttaccgtgctctttgttgccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT