1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTTTTTGGAAGGGGTGGAGAAGAGATGGATTTCTTACAGCAACAGGGAATTAAAGTTGAAGTTATCCCAGgtttgataatcctattgcactagcttggatactttgcatcgttggttggtatcagttatgaactactttggatctaaattccaaaactttgcag
species | Zea mays |
transcript | GRMZM2G105604_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGAGATGGATTTCTTACAGCAACAGGGAATTAAAGTTGAAGTTATCCCAG GAATTACTTCTGCTTCGGGTATTGCAGCAGAGCTAGGCATTCCGTTAACCCEST: gi|166425226|gb|EG075140.1|EG075140
genomic: AGAGATGGATTTCTTACAGCAACAGGGAATTAAAGTTGAAGTTATCCCAGgtttgataat ... aactttgcagGAATTACTTCTGCTTCGGGTATTGCAGCAGAGCTAGGCATTCCGTTAACCC
EST: TTGAAGTTATCCCAG GAATTACTTCTGCTTCGGGTATT-CAGCAGAGCTAGGCATTCCGTTAACCCEST: gi|71762338|gb|DR960275.1|DR960275
genomic: TTGAAGTTATCCCAGgtttgataat ... aactttgcagGAATTACTTCTGCTTCGGGTATTGCAGCAGAGCTAGGCATTCCGTTAACCC
EST: AGAGATGGATTTCTTACAGCAACAGGGAATAAAAGTTGAAGTTATCCCAGG GAATTACTTCTGCTTCGGGTATTGCAGCAGAGCTAGGCATTCCGTTAACC
genomic: AGAGATGGATTTCTTACAGCAACAGGGAATTAAAGTTGAAGTTATCCCA-Ggtttgataat ... aactttgcagGAATTACTTCTGCTTCGGGTATTGCAGCAGAGCTAGGCATTCCGTTAACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTTTGGAAGGGGTGGAGAAGAGATGGATTTCTTACAGCAACAGGGAATTAAAGTTGAAGTTATCCCAGgtttgataatcctattgcactagcttggatactttgcatcgttggttggtatcagttatgaactactttggatctaaattccaaaactttgcag
- - - - - - - - - - GAGATG
- - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG