1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTTCCAAAGGAAGCAGCTAAAGATCAGATTCCCTGAGCGTGGAAGAAGTGGGAGAACTGTGTTGACGATAAACAATCTTCAATTCGGATTTGAGAATAAGgtcaacaatgttgtgcaaatgctcatttcttccaagattttatttttttcgaatttatacactgtgatattctctacatcaaacttttgcacatatcctgattgctgtgttgtgtgtccag
species | Zea mays |
transcript | GRMZM2G105570_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AACTGTGTTGACGATAAACAATCTTCAATTCGGATTTGAGAATAAG ACTTTGTTCAACAATGCTAATCTGATAGTAGAGAGAGGTGAAAAGATAGCTEST: gi|32920520|gb|CF025332.1|CF025332
genomic: AACTGTGTTGACGATAAACAATCTTCAATTCGGATTTGAGAATAAGgtcaacaatg ... gtgtgtccagACTTTGTTCAACAATGCTAATCTGATAGTAGAGAGAGGTGAAAAGATAGCT
EST: GGAGAACTGTGTTGACGATAAACAATCTTCAATTCGGATTTGAGAATAAG ACTTTGTTCAACAATGCTAATCTGATAGTAGAGAGAGGTGAAAAGATAGCTEST: gi|78111656|gb|DV530053.1|DV530053
genomic: GGAGAACTGTGTTGACGATAAACAATCTTCAATTCGGATTTGAGAATAAGgtcaacaatg ... gtgtgtccagACTTTGTTCAACAATGCTAATCTGATAGTAGAGAGAGGTGAAAAGATAGCT
EST: GGAGAACTGTGTTGACGATAAACAATCTTCAATTCGGATTTGAGAATAAG ACTTTGTTCAACAATGCTAATCTGATAGTAGAGAGAGGTGAAAAGATAGCTEST: gi|32921211|gb|CF026023.1|CF026023
genomic: GGAGAACTGTGTTGACGATAAACAATCTTCAATTCGGATTTGAGAATAAGgtcaacaatg ... gtgtgtccagACTTTGTTCAACAATGCTAATCTGATAGTAGAGAGAGGTGAAAAGATAGCT
EST: TGTGTTGACGATAAGCAATCTTCAATTCGGATTTGAGAATAAG ACTTTGTTCAACAATGCTAATCTGATAGCAGAGAGAGGTGAAAAGATAGTTEST: gi|32840955|gb|CD980636.1|CD980636
genomic: TGTGTTGACGATAAACAATCTTCAATTCGGATTTGAGAATAAGgtcaacaatg ... gtgtgtccagACTTTGTTCAACAATGCTAATCTGATAGTAGAGAGAGGTGAAAAGATAGCT
EST: AATCTTCAATTCGGATTTGAGAATAAG ACTTTGTTCAACAATGCTAATCTGATAGTAGAGAGAGGTGAAAAGATAGCT
genomic: AATCTTCAATTCGGATTTGAGAATAAGgtcaacaatg ... gtgtgtccagACTTTGTTCAACAATGCTAATCTGATAGTAGAGAGAGGTGAAAAGATAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTCCAAAGGAAGCAGCTAAAGATCAGATTCCCTGAGCGTGGAAGAAGTGGGAGAACTGTGTTGACGATAAACAATCTTCAATTCGGATTTGAGAATAAGgtcaacaatgttgtgcaaatgctcatttcttccaagattttatttttttcgaatttatacactgtgatattctctacatcaaacttttgcacatatcctgattgctgtgttgtgtgtccag
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA