1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AAAGGCCCGGGAGGAGTTTCGGACAGTAAGTCAAAAAAATGGAGGAACAGGAGTAAAAGATTTCATGGATAGCATGGGCCTTGGGGTGCTTGTTGAGCAGgtgaatgatgatagtcatgtatactttgtgttcagtcatcttaggatcattataaagcactttgtcccagttcagtttggtatttggctaacgccatctttcaatacag
species | Zea mays |
transcript | GRMZM2G105539_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GAGTAAAAGATTTCATGGATAGCATGGGCCTTGGGGTGCTTGTTGAGCAG CTTGGAGAGTTAAAATTGGGGGAATTGTTGGACACACCACCACCTGGCTTGEST: gi|148958813|gb|EC905077.2|EC905077
genomic: GAGTAAAAGATTTCATGGATAGCATGGGCCTTGGGGTGCTTGTTGAGCAGgtgaatgatg ... ttcaatacagCTTGGAGAGTTAAAATTGGGGGAATTGTTGGACACACCACCACCTGGCTTG
EST: GAGTAAAAGATTTCATGGATAGCATGGGCCTTGGGGTGCTTGTTGAGCAG CTTGGAGAGTTAAAATTGGGGGAATTGTTGGACACACCACCACCTGGCTTGEST: gi|5296253|gb|AI782933.1|AI782933
genomic: GAGTAAAAGATTTCATGGATAGCATGGGCCTTGGGGTGCTTGTTGAGCAGgtgaatgatg ... ttcaatacagCTTGGAGAGTTAAAATTGGGGGAATTGTTGGACACACCACCACCTGGCTTG
EST: GCTTGTTGAGCAG CTTGGAGAGTTAAAATTGGGGGAATTGTTGGACACACCACCACCTGGCTTGEST: gi|211363054|gb|FL031142.1|FL031142
genomic: GCTTGTTGAGCAGgtgaatgatg ... ttcaatacagCTTGGAGAGTTAAAATTGGGGGAATTGTTGGACACACCACCACCTGGCTTG
EST: AAAGATTTCATGGATAGCATGGGCCTTGGGGTGCTTGTTGAGCAG CTTGGAGAGTTAAAATTGGGGGAATTGTTGGACACACCACCACCTGGCTTGEST: gi|148962847|gb|EE013769.2|EE013769
genomic: AAAGATTTCATGGATAGCATGGGCCTTGGGGTGCTTGTTGAGCAGgtgaatgatg ... ttcaatacagCTTGGAGAGTTAAAATTGGGGGAATTGTTGGACACACCACCACCTGGCTTG
EST: GAGTAAAAGATTTCATGGATAGCATGGGCCTTGGGGTGCTTGTTGAGCAG CTTGGAGAGTTAAAATTGGGGGAATTGTTGGACACACCACCACCTGGCTTGEST: gi|18385084|gb|BM418283.1|BM418283
genomic: GAGTAAAAGATTTCATGGATAGCATGGGCCTTGGGGTGCTTGTTGAGCAGgtgaatgatg ... ttcaatacagCTTGGAGAGTTAAAATTGGGGGAATTGTTGGACACACCACCACCTGGCTTG
EST: GAGTAAAAGATTTCATGGATAGCATGGGCCTTGGGGTGCTTGTTGAGCAG CTTGGAGAGTTAAAATTGGGGGAATTGTTGGACACACCACCACCTGGCTTGEST: gi|87152689|gb|DY397478.1|DY397478
genomic: GAGTAAAAGATTTCATGGATAGCATGGGCCTTGGGGTGCTTGTTGAGCAGgtgaatgatg ... ttcaatacagCTTGGAGAGTTAAAATTGGGGGAATTGTTGGACACACCACCACCTGGCTTG
EST: GAGTAAAAGATTTCATGGATAGCATGGGCCTTGGGGTGCTTGTTGAGCAG CTTGGAGAGTTAAAATTGGGGGAATTGTTGGACACACCACCACCTGGCTTG
genomic: GAGTAAAAGATTTCATGGATAGCATGGGCCTTGGGGTGCTTGTTGAGCAGgtgaatgatg ... ttcaatacagCTTGGAGAGTTAAAATTGGGGGAATTGTTGGACACACCACCACCTGGCTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGGCCCGGGAGGAGTTTCGGACAGTAAGTCAAAAAAATGGAGGAACAGGAGTAAAAGATTTCATGGATAGCATGGGCCTTGGGGTGCTTGTTGAGCAGgtgaatgatgatagtcatgtatactttgtgttcagtcatcttaggatcattataaagcactttgtcccagttcagtttggtatttggctaacgccatctttcaatacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG