1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCATACTAGGATGCCTCGTGGATTTGGATTTGTTACATTTTCCGATCCGTCTGTGCTTGACAGGGTTCTAGAGGATGAACATGTCATAGATGGAAGGACGgtaaggcttctaagtttaatatctgaaaatcacgatcttaattttgtagtttgtactatattctcaactgtgttttttatgcttcaag
species | Zea mays |
transcript | GRMZM2G104481_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTGTGCTTGACAGGGTTCTAGAGGATGAACATGTCATAGATGGAAGGACG GTTGAAGTCAAAAGGACTGTTCCAAAAGAGCTGTCGTCGAAAGATGGCCCTEST: gi|87155291|gb|DY400080.1|DY400080
genomic: CTGTGCTTGACAGGGTTCTAGAGGATGAACATGTCATAGATGGAAGGACGgtaaggcttc ... atgcttcaagGTTGAAGTCAAAAGGACTGTTCCAAAAGAGCTGTCGTCGAAAGATGGCCCT
EST: CTGTGCTTGACAGGGTTCTAGAGGATGAACATGTCATAGATGGAAGGACG GTTGAAGTCAAAAGGACTGTTCCAAAAGAGCTGTCGTCGAAAGATGGCCCTEST: gi|37420327|gb|CF647854.1|CF647854
genomic: CTGTGCTTGACAGGGTTCTAGAGGATGAACATGTCATAGATGGAAGGACGgtaaggcttc ... atgcttcaagGTTGAAGTCAAAAGGACTGTTCCAAAAGAGCTGTCGTCGAAAGATGGCCCT
EST: GAGGATGAACATGTCATAGATGGAAGGACG GTTGAAGTCAAAAGGACTGTTCCAAAAGAGCTGTCGTCGAAAGATGGCCCT
genomic: GAGGATGAACATGTCATAGATGGAAGGACGgtaaggcttc ... atgcttcaagGTTGAAGTCAAAAGGACTGTTCCAAAAGAGCTGTCGTCGAAAGATGGCCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCATACTAGGATGCCTCGTGGATTTGGATTTGTTACATTTTCCGATCCGTCTGTGCTTGACAGGGTTCTAGAGGATGAACATGTCATAGATGGAAGGACGgtaaggcttctaagtttaatatctgaaaatcacgatcttaattttgtagtttgtactatattctcaactgtgttttttatgcttcaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG