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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTTTCAATCTACACAGGATTAATATACAATGAATTTTTCTCTGTTCCATTTGGGCTTTTTGGTAAATCTGCCTATGCATGCCGTGATTCTTCTTGTAGgtaaggaaaatgaaataaataaacctatgcttatttatttatagaactgcacatttatctggctcattaatttccccacttgttcatag

Basic information

species Zea mays
transcript GRMZM2G104418_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G104418_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g14690.1 (Oryza sativa), 5'ss of exon 12
TTTTTTCAATCTACACAGGATTAATATACAATGAATTTTTCTCTGTTCCATTTGGGCTTTTTGGTAAATCTGCCTATGCATGCCGTGATTCTTCTTGTAGgtaaggaaaatgaaataaataaacctatgcttatttatttatagaactgcacatttat-ctggctcattaatttccccacttgttcatag
| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||| |||||| |||| |    ||| ||| | | | || | |   | || ||  | | |||||| |   || |||  ||  |       || |   
TCTTTTCAATCTATACAGGATTAATATACAATGAATTTTTCTCTGTTCCATTTGAGCTTTTTGGTAAATCTGCTTATGCATGCCGTGATCCTTCTTGTGGgtaagaaaaa-gtttcaaacaaaaccacgtttttatccctttaaaaaagaatatttatgcctacttattgtttgtcttgtggatttag--

upper sequence: GRMZM2G104418_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA04G03010.1 (Glycine max), 5'ss of exon 13
TTTTTTCAATCTACACAGGATTAATATACAATGAATTTTTCTCTGTTCCATTTGGGCTTTTTGGTAAATCTGCCTATGCATGCCGTGATTCTTCTTGTAGgta------aggaaaatgaaataaataaaccta---tgcttatttatttatagaactg--------cacatttatctggctcattaatttccccact--tgttcatag------------------------
                             ||||| || ||||||||||||||||  || |||||   ||||||||||| ||| |||||| |||| |||||||       || | |||| | | || |    ||   | ||| | |||| || ||| ||         | || | | ||    ||| |||    ||    || |  ||                         
-----------------------------AATGAGTTCTTCTCTGTTCCATTTGAACTATTTGGACCATCTGCCTATGGATGTCGTGATCCTTCATGTAGGTGGCTATTAgtagaatgtattcaacaggattagtcttcttttctattaattgaattgacttaaattatatgtgtgtgcaatatttattattacagggatgcttctacaacaggtttcataaaagtgcgtag

upper sequence: GRMZM2G104418_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA06G03040.1 (Glycine max), 5'ss of exon 12
TTTTTTCAATCTACACAGGATTAATATACAATGAATTTTTCTCTGTTCCATTTGGGCTTTTTGGTAAATCTGCCTATGCATGCCGTGATTCTTCTTGTAGgta------aggaaaatgaaataaataaac--ctatgcttatttatttatagaactgcacatttatctggctcattaatttccccacttgttcatag
| || |||||||| || || || ||||| || || |||||||||||||||||||  || |||||   |||||| |||| ||| ||||||||||| || ||||       || | |||  | | || | |   || | ||  | |||| || ||| ||   | |||  | |    |   |        || || | ||
TCTTCTCAATCTATACCGGGTTGATATATAACGAGTTTTTCTCTGTTCCATTTGAACTATTTGGACCATCTGCTTATGGATGTCGTGATTCTTCATGCAGgtggttattagtacaatttattcaacagattacttttctcttctattaattgaattg---acttaaattgtgtgtgtgtaatattcattatt-acag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32929086|gb|CF033898.1|CF033898
EST:     TTTGGGCTTTTTGGTAAATCTGCCTATGCATGCCGTGATTCTTCTTGTAG                         TGATGCTACTACTGAAGGACTAATTAAGGTAAGAGATGCATACCCTTTTGG
genomic: TTTGGGCTTTTTGGTAAATCTGCCTATGCATGCCGTGATTCTTCTTGTAGgtaaggaaaa ... ttgttcatagTGATGCTACTACTGAAGGACTAATTAAGGTAAGAGATGCATACCCTTTTGG
EST: gi|94475016|gb|EB703974.1|EB703974
EST:     TGGGCTTTTTGGTAAATCTGCCTATGCATGCCGTGATTCTTCTTGTAG                         TGATGCTACTACTGAAGGACTAATTAAGGTAAGAGATGCATACCCTTTTGG
genomic: TGGGCTTTTTGGTAAATCTGCCTATGCATGCCGTGATTCTTCTTGTAGgtaaggaaaa ... ttgttcatagTGATGCTACTACTGAAGGACTAATTAAGGTAAGAGATGCATACCCTTTTGG
EST: gi|32929323|gb|CF034135.1|CF034135
EST:     TTTGGGCTTTTTGGTAAATCTGCCTATGCATGCCGTGATTCTTCTTGTAG                         TGATGCTACTACTGAAGGACTAATTAAGGTAAGAGATGCATACCCTTTTGG
genomic: TTTGGGCTTTTTGGTAAATCTGCCTATGCATGCCGTGATTCTTCTTGTAGgtaaggaaaa ... ttgttcatagTGATGCTACTACTGAAGGACTAATTAAGGTAAGAGATGCATACCCTTTTGG
EST: gi|211366580|gb|FK956889.1|FK956889
EST:     GTAAATCTGCCTATGCATGCCGTGATTCTTCTTGTAG                         TGATGCTACTACTGAAGGACTAATTAAGGTAAGAGATGCATACCCTTTTGG
genomic: GTAAATCTGCCTATGCATGCCGTGATTCTTCTTGTAGgtaaggaaaa ... ttgttcatagTGATGCTACTACTGAAGGACTAATTAAGGTAAGAGATGCATACCCTTTTGG
EST: gi|32929184|gb|CF033996.1|CF033996
EST:     TTTGGGCTTTTTGGTAAATCTGCCTATGCATGCCGTGATTCTTCTTGTAG                         TGATGCTACTACTGAAGGACTAATTAAGGTAAGAGATGCATACCCTTTTGG
genomic: TTTGGGCTTTTTGGTAAATCTGCCTATGCATGCCGTGATTCTTCTTGTAGgtaaggaaaa ... ttgttcatagTGATGCTACTACTGAAGGACTAATTAAGGTAAGAGATGCATACCCTTTTGG
EST: gi|32930632|gb|CF035444.1|CF035444
EST:     TTTGGGCTTTTTGGTAAATCTGCCTATGCATGCCGTGATTCTTCTTGTAG                         TGATGCTACTACTGAAGGACTAATTAAGGTAAGAGATGCATACCCTTTTGG
genomic: TTTGGGCTTTTTGGTAAATCTGCCTATGCATGCCGTGATTCTTCTTGTAGgtaaggaaaa ... ttgttcatagTGATGCTACTACTGAAGGACTAATTAAGGTAAGAGATGCATACCCTTTTGG
EST: gi|78080517|gb|DV508929.1|DV508929
EST:     TTTGGGCTTTTTGGTAAATCTGCCTATGCATGCCGTGATTCTTCTTGTAG                         TGATGCTACTACTGAAGGACTAATTAAGGTAAGAGATGCATACCCTTTTGG
genomic: TTTGGGCTTTTTGGTAAATCTGCCTATGCATGCCGTGATTCTTCTTGTAGgtaaggaaaa ... ttgttcatagTGATGCTACTACTGAAGGACTAATTAAGGTAAGAGATGCATACCCTTTTGG
EST: gi|32929163|gb|CF033975.1|CF033975
EST:     TTTGGGCTTTTTGGTAAATCTGCCTATGCATGCCGTGATTCTTCTTGTAG                         TGATGCTACTACTGAAGGACTAATTAAGGTAAGAGATGCATACCCTTTTGG
genomic: TTTGGGCTTTTTGGTAAATCTGCCTATGCATGCCGTGATTCTTCTTGTAGgtaaggaaaa ... ttgttcatagTGATGCTACTACTGAAGGACTAATTAAGGTAAGAGATGCATACCCTTTTGG
EST: gi|32928488|gb|CF033300.1|CF033300
EST:     TTTGGGCTTTTTGGTAAATCTGCCTATGCATGCCGTGATTCTTCTTGTAG                         TGATGCTACTACTGAAGGACTAATTAAGGTAAGAGATGCATACCCTTTTGG
genomic: TTTGGGCTTTTTGGTAAATCTGCCTATGCATGCCGTGATTCTTCTTGTAGgtaaggaaaa ... ttgttcatagTGATGCTACTACTGAAGGACTAATTAAGGTAAGAGATGCATACCCTTTTGG