Sequence
atgc intronic sequence ATGC exonic sequenceCTGGGAATGGCCATCTGACTCTCAGAGAGCTCAAACGTGGAAATTTAATTGCTGCACTTCAGCAGTTAGATGAGGAAGAAGATATCAACAAAGTGTTGAGgtaattaatatatgacttgctaacagattgccgctgcctatccattatccctccgttcataaatatatgacactgttgacttttttaaaaaactgaccac...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G104254_T02 (Zea mays), 5'ss of exon 3
lower sequence: Vv14s0036g00750.t01 (Vitis vinifera), 5'ss of exon 4
CTGGGAATGGCCATCTGACTCTCAGAGAGCTCAAACGTGGAAATTTAATTGCTGCACTTCAGCAGTTAGATGAGGAAGAAGATATCAACAAAGTGTTGAGgtaattaatatatga---cttgctaacagattgccgctgcctatccattatc---cctccgttcataaatatatgacactgttgacttttttaaaaaactgaccac
|||||||||| || || || ||||||||||| |||||||| || |||||||||||| | || || |||||| || || || ||||| ||||||||||||||| | |||| |||| | || ||| | || || ||| || |||| || | | || | | |||||| | ||
CTGGGAATGGTCAACTTACCCTCAGAGAGCTAAAACGTGGGAACTTAATTGCTGCAATGCAACATGCAGATGACGAGGAGGACATCAATAAAGTGTTGAGgtaaacgaccaatgaaaacttgg-attagtttgtctttgaatagagattgctggttgtctagtcatgtatcttgggcaggtcttattttttttttt--tttac---
upper sequence: GRMZM2G104254_T02 (Zea mays), 5'ss of exon 3
lower sequence: PP1S147_62V6.2 (Physcomitrella patens), 5'ss of exon 7
CTGGGAATGGCCATCTGACTCTCAGAGAGCTCAAACGTGGAAATTTAATTGCTGCACTTCAGCAGTTAGATGAGGAAGAAGATATCAACAAAGTGTTGAGgtaattaatatatgacttgctaacagattgccgctgcctatccattatccctccgttcataaatatatgacactgttgactttttta-aaaaactgaccac-----
|||||||||| | || || |||||| | ||||| | || |||||| |||| |||||||| | ||||| |||||||||||||||||||||||| ||| | ||||| | || | || | ||| || || || | | ||| | | | ||| || | || || ||
CTGGGAATGGTCGGCTACAACTTAGAGAGTTAAAACGGAGTAACTTAATTACTGCTCTTCAGCAAGTGGATGAAGAAGAAGATATCAACAAAGTGTTGCGgtg---agtatatctcctggcga--atttcctgctttttacatctt-caggtctgatgatacccttgaactattactgagttgtgagcaagaaatgcttgggtgtg
upper sequence: GRMZM2G104254_T02 (Zea mays), 5'ss of exon 3
lower sequence: PP1S7_163V6.1 (Physcomitrella patens), 5'ss of exon 7
CTGGGAATGGCCATCTGACTCTCAGAGAGCTCAAACGTGGAAATTTAATTGCTGCACTTCAGCAGTTAGATGAGGAAGAAGATATCAACAAAGTGTTGAGgtaattaatatatg-acttgctaacagattgccgctgcctatccattatccctccgttcataaatatatgacactgttgacttttttaaaaaactgaccac
|||||||||| | || || |||||| | || || | |||||||||||||| |||||||| | ||||| || ||||| |||||||||||||| ||||| | | || ||| || | | | | | | | || | | | || || | | || | | |||| | |
CTGGGAATGGTCGGCTACAACTTAGAGAGTTAAAGCGGAGTAATTTAATTGCTGCTCTTCAGCAAGTGGATGAAGAGGAAGACATCAACAAAGTGTTACGgtaagcattgcttgtgattggcaattgttctatgtttcatcttcaggcctgatgagacctatgatttacaat-caattaatgaaatataaaagttttgaatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|60352587|gb|DN219560.1|DN219560EST: GCTGCACTTCAGCAGTTAGATGAGGAAGAAGATATCAACAAAGTGTTGAG ATACTTCTCATATGAGCACTTTTATGTGATCTATTGCAAATTCTGGGAGCT
genomic: GCTGCACTTCAGCAGTTAGATGAGGAAGAAGATATCAACAAAGTGTTGAGgtaattaata ... tctgatgcagATACTTCTCATATGAGCACTTTTATGTGATCTATTGCAAATTCTGGGAGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTGGGAATGGCCATCTGACTCTCAGAGAGCTCAAACGTGGAAATTTAATTGCTGCACTTCAGCAGTTAGATGAGGAAGAAGATATCAACAAAGTGTTGAGgtaattaatatatgacttgctaacagattgccgctgcctatccattatccctccgttcataaatatatgacactgttgacttttttaaaaaactgaccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tccctccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaact