1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CATTTTCAAAGGGACATTGTTCGGGGCGTGGAGGGCTATATAGTCACAGGATCTAAACAAGTCGAAATAGgtagttcattcatactatctatcagttatggagtttttttagcagaacttgtcagttatattgttatctgagtaaaactgatcttaactgctaaggtgtgcaatctgtattag
species | Zea mays |
transcript | GRMZM2G104166_T02 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCGGGGCGTGGAGGGCTATATAGTCACAGGATCTAAACAAGTCGAAATAG GGAATAAATTGTCTGATGACAGCCAGAAATACGGTGTTGGAAACACATGTAEST: gi|91056507|gb|EB166925.1|EB166925
genomic: TCGGGGCGTGGAGGGCTATATAGTCACAGGATCTAAACAAGTCGAAATAGgtagttcatt ... tctgtattagGGAATAAATTGTCTGATGACAGCCAGAAATACGGTGTTGGAAACACATGTA
EST: TCGGGGCGTGGAGGGCTATATAGTCACAGGATCTAAACAAGTCGAAATAG GGAATAAATTGTCTGATGACAGCCAGAAATACGGTGTTGGAAACACATGTAEST: gi|50336720|gb|CO531846.1|CO531846
genomic: TCGGGGCGTGGAGGGCTATATAGTCACAGGATCTAAACAAGTCGAAATAGgtagttcatt ... tctgtattagGGAATAAATTGTCTGATGACAGCCAGAAATACGGTGTTGGAAACACATGTA
EST: TCGGGGCGTGGAGGGCTATATAGTCACAGGATCTAAACAAGTCGAAATAG GGAATAAATTGTCTGATGACAGCCAGAAATACGGTGTTGGAAACACATGTAEST: gi|148970807|gb|EE021570.2|EE021570
genomic: TCGGGGCGTGGAGGGCTATATAGTCACAGGATCTAAACAAGTCGAAATAGgtagttcatt ... tctgtattagGGAATAAATTGTCTGATGACAGCCAGAAATACGGTGTTGGAAACACATGTA
EST: TCGGGGCGTGGAGGGCTATATAGTCACAGGATCTAAACAAGTCGAAATAG GGAATAAATTGTCTGATGACAGCCAGAAATACGGTGTTGGAAACACATGTAEST: gi|91873694|gb|EB403651.1|EB403651
genomic: TCGGGGCGTGGAGGGCTATATAGTCACAGGATCTAAACAAGTCGAAATAGgtagttcatt ... tctgtattagGGAATAAATTGTCTGATGACAGCCAGAAATACGGTGTTGGAAACACATGTA
EST: TCGGGGCGTGGAGGGCTATATAGTCACAGGATCTAAACAAGTCGAAATAG GGAATAAATTGTCTGATGACAGCCAGAAATACGGTGTTGGAAACACATGTAEST: gi|211195883|gb|FL115001.1|FL115001
genomic: TCGGGGCGTGGAGGGCTATATAGTCACAGGATCTAAACAAGTCGAAATAGgtagttcatt ... tctgtattagGGAATAAATTGTCTGATGACAGCCAGAAATACGGTGTTGGAAACACATGTA
EST: TCGGGGCGTGGAGGGCTATATAGTCACAGGATCTAAACAAGTCGAAATAG GGAATAAATTGTCTGATGACAGCCAGAAATACGGTGTTGGAAACACATTGTEST: gi|211195880|gb|FL114998.1|FL114998
genomic: TCGGGGCGTGGAGGGCTATATAGTCACAGGATCTAAACAAGTCGAAATAGgtagttcatt ... tctgtattagGGAATAAATTGTCTGATGACAGCCAGAAATACGGTGTTGGAAACACAT-GT
EST: TCGGGGCGTGGAGGGCTATATAGTCACAGGATCTAAACAAGTCGAAATAG GGAATAAATTGTCTGATGACAGCCAGAAATACGGTGTTGGAAACACATGTAEST: gi|211304267|gb|FL115004.1|FL115004
genomic: TCGGGGCGTGGAGGGCTATATAGTCACAGGATCTAAACAAGTCGAAATAGgtagttcatt ... tctgtattagGGAATAAATTGTCTGATGACAGCCAGAAATACGGTGTTGGAAACACATGTA
EST: TCGGGGCGTGGAGGGCTATATAGTCACAGGATCTAAACAAGTCGAAATAG GGAATAAATTGTCTGATGACAGC-AGAAATACGGTGTTGGAEST: gi|148996413|gb|EE035708.2|EE035708
genomic: TCGGGGCGTGGAGGGCTATATAGTCACAGGATCTAAACAAGTCGAAATAGgtagttcatt ... tctgtattagGGAATAAATTGTCTGATGACAGCCAGAAATACGGTGTTGGA
EST: TCGGGGCGTGGAGGGCTATATAGTCACAGGATCTAAACAAGTCGAAATAG GGAATAAATTGTCTGATGACAGCCAGAAATACGGTGTTGGAAACACATGTAEST: gi|211195879|gb|FL114997.1|FL114997
genomic: TCGGGGCGTGGAGGGCTATATAGTCACAGGATCTAAACAAGTCGAAATAGgtagttcatt ... tctgtattagGGAATAAATTGTCTGATGACAGCCAGAAATACGGTGTTGGAAACACATGTA
EST: TCGGGGCGTGGAGGGCTATATAGTCACAGGATCTAAACAAGTCGAAATAG GGAATAAATTGTCTGATGACAGCCAGAAATACGGTGTTGGAAACACATGTAEST: gi|211304269|gb|FL115006.1|FL115006
genomic: TCGGGGCGTGGAGGGCTATATAGTCACAGGATCTAAACAAGTCGAAATAGgtagttcatt ... tctgtattagGGAATAAATTGTCTGATGACAGCCAGAAATACGGTGTTGGAAACACATGTA
EST: TCGGGGCGTGGAGGGCTATATAGTCACAGGATCTAAACAAGTCGAAATAG GGAATAAATTGTCTGATGACAGCCAGAAATACGGTGTTGGAAACACATGTAEST: gi|74236878|gb|DT644792.1|DT644792
genomic: TCGGGGCGTGGAGGGCTATATAGTCACAGGATCTAAACAAGTCGAAATAGgtagttcatt ... tctgtattagGGAATAAATTGTCTGATGACAGCCAGAAATACGGTGTTGGAAACACATGTA
EST: TCGGGGCGTGGAGGGCTATATAGTCACAGGATCTAAACAAGTCGAAATAG GGAATAAATTGTCTGATGACAGCCAGAAATACGGTGTTGGAAACACATGTAEST: gi|211195881|gb|FL114999.1|FL114999
genomic: TCGGGGCGTGGAGGGCTATATAGTCACAGGATCTAAACAAGTCGAAATAGgtagttcatt ... tctgtattagGGAATAAATTGTCTGATGACAGCCAGAAATACGGTGTTGGAAACACATGTA
EST: TCGGGGCGTGGAGGGCTATATAGTCACAGGATCTAAACAAGTCGAAATAG GGAATAAATTGTCTGATGACAGCCAGAAATACGGTGTTGGAAACACATGTAEST: gi|76283090|gb|DV022658.1|DV022658
genomic: TCGGGGCGTGGAGGGCTATATAGTCACAGGATCTAAACAAGTCGAAATAGgtagttcatt ... tctgtattagGGAATAAATTGTCTGATGACAGCCAGAAATACGGTGTTGGAAACACATGTA
EST: TCGGGGCGTGGAGGGCTATATAGTCACAGGATCTAAACAAGTCGAAATAG GGAATAAATTGTCTGATGACAGCCAGAAATACGGTGTTGGAAACACATGTAEST: gi|26456480|gb|CA828063.1|CA828063
genomic: TCGGGGCGTGGAGGGCTATATAGTCACAGGATCTAAACAAGTCGAAATAGgtagttcatt ... tctgtattagGGAATAAATTGTCTGATGACAGCCAGAAATACGGTGTTGGAAACACATGTA
EST: TCGGGGCGTGGAGGGCTATATAGTCACAGGATCTAAACAAGTCGAAATAG GGAATAAATTGTCTGATGACAGCCAGAAATACGGTGTTGGAAACACATGTAEST: gi|76927135|gb|DV171161.1|DV171161
genomic: TCGGGGCGTGGAGGGCTATATAGTCACAGGATCTAAACAAGTCGAAATAGgtagttcatt ... tctgtattagGGAATAAATTGTCTGATGACAGCCAGAAATACGGTGTTGGAAACACATGTA
EST: TCGGGGCGTGGAGGGCTATATAGTCACAGGATCTAAACAAGTCGAAATAG GGAATAAATTGTCTGATGACAGCCAGAAATACGGTGTTGGAAACACATGTAEST: gi|211304266|gb|FL115003.1|FL115003
genomic: TCGGGGCGTGGAGGGCTATATAGTCACAGGATCTAAACAAGTCGAAATAGgtagttcatt ... tctgtattagGGAATAAATTGTCTGATGACAGCCAGAAATACGGTGTTGGAAACACATGTA
EST: TCGGGGCGTGGAGGGCTATATAGTCACAGGATCTAAACAAGTCGAAATAG GGAATAAATTGTCTGATGACAGCCAGAAATACGGTGTTGGAAACACATGTAEST: gi|37424980|gb|CF650224.1|CF650224
genomic: TCGGGGCGTGGAGGGCTATATAGTCACAGGATCTAAACAAGTCGAAATAGgtagttcatt ... tctgtattagGGAATAAATTGTCTGATGACAGCCAGAAATACGGTGTTGGAAACACATGTA
EST: TCGGGGCGTGGAGGGCTATATAGTCACAGGATCTAAACAAGTCGAAATAG GGAATAAATTGTCTGATGACAGCCAGAAATACGGTGTTGGAAACACATGTAEST: gi|148981761|gb|EE027867.2|EE027867
genomic: TCGGGGCGTGGAGGGCTATATAGTCACAGGATCTAAACAAGTCGAAATAGgtagttcatt ... tctgtattagGGAATAAATTGTCTGATGACAGCCAGAAATACGGTGTTGGAAACACATGTA
EST: TCGGGGCGTGGAGGGCTATATAGTCACAGGATCTAAACAAGTCGAAATAG GGAATAAATTGTCTGATGACAGCCAGAAATACGGTGTTGGAAACACATGTAEST: gi|211304268|gb|FL115005.1|FL115005
genomic: TCGGGGCGTGGAGGGCTATATAGTCACAGGATCTAAACAAGTCGAAATAGgtagttcatt ... tctgtattagGGAATAAATTGTCTGATGACAGCCAGAAATACGGTGTTGGAAACACATGTA
EST: TCGGGGCGTGGAGGGCTATATAGTCACAGGATCTAAACAAGTCGAAATAG GGAATAAATTGTCTGATGACAGCCAGAAATACGGTGTTEST: gi|33466753|gb|CF243802.1|CF243802
genomic: TCGGGGCGTGGAGGGCTATATAGTCACAGGATCTAAACAAGTCGAAATAGgtagttcatt ... tctgtattagGGAATAAATTGTCTGATGACAGCCAGAAATACGGTGTT
EST: TCGGGGCGTGGAGGGCTATATAGTCACAGGATCTAAACAAGTCGAAATAG GGAATAAATTGTCTGATGACAGCCAGAAATACGGTGTTGGAAACACATGTAEST: gi|211195884|gb|FL115002.1|FL115002
genomic: TCGGGGCGTGGAGGGCTATATAGTCACAGGATCTAAACAAGTCGAAATAGgtagttcatt ... tctgtattagGGAATAAATTGTCTGATGACAGCCAGAAATACGGTGTTGGAAACACATGTA
EST: TCGGGGCGTGGAGGGCTATATAGTCACAGGATCTAAACAAGTCGAAATAG GGAATAAATTGTCTGATGACAGCCAGAAATACGGTGTTGGAAACACATGTA
genomic: TCGGGGCGTGGAGGGCTATATAGTCACAGGATCTAAACAAGTCGAAATAGgtagttcatt ... tctgtattagGGAATAAATTGTCTGATGACAGCCAGAAATACGGTGTTGGAAACACATGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATTTTCAAAGGGACATTGTTCGGGGCGTGGAGGGCTATATAGTCACAGGATCTAAACAAGTCGAAATAGgtagttcattcatactatctatcagttatggagtttttttagcagaacttgtcagttatattgttatctgagtaaaactgatcttaactgctaaggtgtgcaatctgtattag
- - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - TGGAGG