Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATCGGCGACGAGCTGCATCACTCTGGCTGGAACTCCTGCAGCTCCTGCCACGGTGACCCATCGGCCAAGCGCCGCTTCCTGATCCTGCCTTCCTTGCTgtgagtactgcatcaaataaattgagatgatcagatgaatatatcagctgtcttactcgactgctgaactcaggactgagaatctgtggtgccgcttcaatggctatttgcag

Basic information

species Zea mays
transcript GRMZM2G103812_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G103812_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g68770.1 (Oryza sativa), 5'ss of exon 2
ACATCGGCGACGAGCTGCATCACTCTGGCTGGAACTCCTGCAGCTCCTGCCACGGTGACCCATCGGCCAAGCGCCGCTTCCTGATCCTGCCTTCCTTGCTgtgagtactgcatcaaataaattgagatgatcagatgaatatatcagctgtcttactcgactgctgaactcaggactgagaatctgtggtgccgcttcaatggctatttgcag
|  ||||||| ||||||||||||||||| |||||| | ||||| || ||||| ||||| |||||||| |  ||||| ||| |||| |||||||| |||||||||||  |        || ||| |||||    |||||||         || |   | || || | |||   | ||||   || |||      ||| ||||| || || ||||
ATGTCGGCGATGAGCTGCATCACTCTGGATGGAACGCTTGCAGTTCTTGCCATGGTGATCCATCGGCTAGCCGCCGTTTCTTGATTCTGCCTTCGTTGCTgtgagtgttaatgtggctatatttagatggatggatgaatcc-----tcgtatctgttga-tgttaaacagcgaactgg--atttgtaa-attgctccaatgtctgtt-gcag

upper sequence: GRMZM2G103812_T02 (Zea mays), 5'ss of exon 2
lower sequence: Vv05s0029g00240.t01 (Vitis vinifera), 5'ss of exon 2
ACATCGGCGACGAGCTGCATCACTCTGGCTGGAACTCCTGCAGCTCCTGCCACGGTGACCCATCGGCCAAGCGCCGCTTCCTGATCCTGCCTTCCTTGCTgtgagtactgcatcaaataaattgagatgatcagatgaatatatcag--ctgtcttactcgactgctgaactcaggactgagaatctgtggtgccgcttcaatggctatttgcag
|  | || || || || || |||||||| ||||||||||||||||| ||||| |||||  ||||     | || || || ||  |||| ||||||||| ||| || |||| |  |  ||  |||  || |     |  |||| | |    |||   | |  | |  | |     | |   |||||  |||  |  |  | | |            
ATTTAGGGGATGAACTACACCACTCTGGGTGGAACTCCTGCAGCTCTTGCCATGGTGATTCATCACAAGAACGGCGTTTTCTTGTCCTACCTTCCTTGGTgtaagaactgga--atttatgttgc-attagggactacatattttaagcttgtagcagtttagtaataatactggtatgaagaatgagtgcaga-gtctaactt-----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149083207|gb|EE172484.2|EE172484
EST:     CACGGTGACCCATCGGCCAAGCGCCGCTTCCTGATCCTGCCTTCCTTGCT                         GTCAGGCCGTGTGTATGTCGTCGACACAGCGACAGACCCAAGGGCGCCATC
genomic: CACGGTGACCCATCGGCCAAGCGCCGCTTCCTGATCCTGCCTTCCTTGCTgtgagtactg ... ctatttgcagGTCAGGCCGTGTGTATGTCGTCGACACAGCGACAGACCCAAGGGCGCCATC
EST: gi|211184168|gb|FL127369.1|FL127369
EST:     ATCGGCCAAGCGCCGGTTCCTGATCCTGCCTTCCTTGCT                         GTCAGGCCGTGTGTATGTCGTCGACACAGCGACAGACCCAAGGGCGCCATC
genomic: ATCGGCCAAGCGCCGCTTCCTGATCCTGCCTTCCTTGCTgtgagtactg ... ctatttgcagGTCAGGCCGTGTGTATGTCGTCGACACAGCGACAGACCCAAGGGCGCCATC
EST: gi|5268463|gb|AI770427.1|AI770427
EST:     CACGGCGACCCATCGGCCAAGCGCCGCTTCCTGATCCTGCCTTCCTTGCT                         GTCAGGCCGTGTGTATGTCGTCGACACAGCGACAGATCCAAGGGCGCCATC
genomic: CACGGTGACCCATCGGCCAAGCGCCGCTTCCTGATCCTGCCTTCCTTGCTgtgagtactg ... ctatttgcagGTCAGGCCGTGTGTATGTCGTCGACACAGCGACAGACCCAAGGGCGCCATC
EST: gi|31355194|gb|CD439551.1|CD439551
EST:     ACGGCGACCCATCGGCCAAGCGCCGCTTCCTGAT-CTCGCCTTCATTGCT                         GTCAGGCCGTGTGTATGTCGTCGACACAGCGACAGACCCAAGGGCGCCATC
genomic: ACGGTGACCCATCGGCCAAGCGCCGCTTCCTGATCCT-GCCTTCCTTGCTgtgagtactg ... ctatttgcagGTCAGGCCGTGTGTATGTCGTCGACACAGCGACAGACCCAAGGGCGCCATC
EST: gi|211184169|gb|FL127370.1|FL127370
EST:     YACGGTGACCCATCGGCCAAGCGCCGCTTCCTGATCCTGCCTTCCTTGCT                         GTCAGGCCGTGTGTATGTCGTCGACACAGCGACAGACCCAAGGGCGCCATC
genomic: CACGGTGACCCATCGGCCAAGCGCCGCTTCCTGATCCTGCCTTCCTTGCTgtgagtactg ... ctatttgcagGTCAGGCCGTGTGTATGTCGTCGACACAGCGACAGACCCAAGGGCGCCATC
EST: gi|31354133|gb|CD438490.1|CD438490
EST:     CACGGCGACCCATCGGCCAAGCGCCGCTTCCTGATCCTGCCTTCATTGCT                         GTCAGGCCGTGTGTATGTCGTCGACACAGCGACAGACCCAAGGGCGCCATC
genomic: CACGGTGACCCATCGGCCAAGCGCCGCTTCCTGATCCTGCCTTCCTTGCTgtgagtactg ... ctatttgcagGTCAGGCCGTGTGTATGTCGTCGACACAGCGACAGACCCAAGGGCGCCATC
EST: gi|32796971|gb|CD949207.1|CD949207
EST:     CGCGGCGACCCATCGGCCAAGCGCCGCTTCCTGATCCTGCCTTCCTTGCT                         GTCAGGCCGTGTGAATGTCGTCGACACAGCGACAAACCCAAGGGCGCCATC
genomic: CACGGTGACCCATCGGCCAAGCGCCGCTTCCTGATCCTGCCTTCCTTGCTgtgagtactg ... ctatttgcagGTCAGGCCGTGTGTATGTCGTCGACACAGCGACAGACCCAAGGGCGCCATC
EST: gi|31355476|gb|CD439833.1|CD439833
EST:     CACGGCGACCCATCGGCCAAGCGCCGCTTCCTGATCCTGCCTTCATTGCT                         GTCAGGCCGTGTGTATGTCGTCGACACAGCGACAGACCCAAGGGCGCCATC
genomic: CACGGTGACCCATCGGCCAAGCGCCGCTTCCTGATCCTGCCTTCCTTGCTgtgagtactg ... ctatttgcagGTCAGGCCGTGTGTATGTCGTCGACACAGCGACAGACCCAAGGGCGCCATC
EST: gi|29167955|gb|CB411215.1|CB411215
EST:     CACGGTGACCCATCGGCCAAGCGCCGCTTCCTGATCCTGCCTTCCTTGCT                         GTCAGGCCGTGTGTATGTCGTCGACACAGCGACAGACCCAAGGGCGCCATC
genomic: CACGGTGACCCATCGGCCAAGCGCCGCTTCCTGATCCTGCCTTCCTTGCTgtgagtactg ... ctatttgcagGTCAGGCCGTGTGTATGTCGTCGACACAGCGACAGACCCAAGGGCGCCATC
EST: gi|67031397|gb|CO460146.1|CO460146
EST:     CACGGCGACCCATCGGCCAAGCGCCGCTTCCTGATCCTGCCTTCCTTGCT                         GTCAGGCCGTGTGTATGTCGTCGACACAGCGACAAACCCAAGGGCGCCATC
genomic: CACGGTGACCCATCGGCCAAGCGCCGCTTCCTGATCCTGCCTTCCTTGCTgtgagtactg ... ctatttgcagGTCAGGCCGTGTGTATGTCGTCGACACAGCGACAGACCCAAGGGCGCCATC