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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATGCTCAACCCAGATTCCAGTTCATTGTCATGAATCGCAGGAATACAGgtattttatcatgtattttttggtactgtttaatctgcaatacaggtattttatcatgtattttttggtattgtataataaggaattacaggtattgtat...

Basic information

species Zea mays
transcript GRMZM2G101596_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G101596_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os07g14580.1 (Oryza sativa), 5'ss of exon 3
GAATGCTCAACCCAGATTCCAGTTCATTGTCATGAATCGCAGGAATACAGgtat--tttatcatgtattttttggtactgtttaatctgcaatacaggtattttatcatgtattttttggtattgtataataaggaattacaggtattgtat-
|||||| || ||||||||||||||  |||||||||||||  | ||||||||||   |  || |    ||| |||||  | ||  |  || | |     || ||    ||||   |       ||||| ||   |    |  |  | |      
GAATGCGCAGCCCAGATTCCAGTTTGTTGTCATGAATCGTCGTAATACAGgtacgctgcatgaaaattttcttggttttcttagagttgaagtttctataattggctatgt---tacaacctttgtaaaacctgtgcgtgaaattgtcaatct

upper sequence: GRMZM2G101596_T01 (Zea mays), 5'ss of exon 3
lower sequence: EFJ11747 (Selaginella moellendorffii), 5'ss of exon 3
GAATGCTCAACCCAGATTCCAGTTCATTGTCATGAATCGCAGGAATACAGgtatt--ttatcatgtattttttggtactgtttaatctgcaatacaggtattttatcatgtattttttggtattgtataataaggaattacaggtattgtat
|      || ||||| ||||||||||||||||||||||||||||  |||||||    | ||     | ||| |     |||||    |  |    |   |  |  || |   |   || || |||     |  |  | |     | |     
GCGGATGCAGCCCAGGTTCCAGTTCATTGTCATGAATCGCAGGAGCACAGgtaagagtgattgca-actttctctctttgtttttcttagacgctaaaaaactcttccttgctggatttgttttgacgcgttggtgactgtgcctgtcag--

upper sequence: GRMZM2G101596_T01 (Zea mays), 5'ss of exon 3
lower sequence: EFJ22541 (Selaginella moellendorffii), 5'ss of exon 3
GAATGCTCAACCCAGATTCCAGTTCATTGTCATGAATCGCAGGAATACAGgtattttatcatgtattttttggtactgtttaatctgcaatacaggtattttatcatgtattttttggtattgtataataaggaattacaggtattgtat-----
|      || ||||| |||||||||||||||||||||||||| |  |||||||        || |  | |   |     ||  | |    || | |      | |  ||  ||  |||  |||| |  | | |  ||   | |  ||  |     
GCGGATGCAGCCCAGGTTCCAGTTCATTGTCATGAATCGCAGAAGCACAGgtaagagtgattgcaactctctctctctctttgtttttcttagacgctaaaaaactcgtccttgctggatttgttt--tgacgcgttggtgattgtgcctgtcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211391322|gb|FK987371.1|FK987371
EST:     GAATGCTCAACCCAGATTCCAGTTCATTGTCATGAATCGCAGGAATACAG                         ATAATCTAGTTGAAGATCTTTTGGGAGATTTTGAATACCAACTACAAGCTC
genomic: GAATGCTCAACCCAGATTCCAGTTCATTGTCATGAATCGCAGGAATACAGgtattttatc ... ttgttaacagATAATCTAGTTGAAGATCTTTTGGGAGATTTTGAATACCAACTACAAGCTC
EST: gi|93282402|gb|EB674666.1|EB674666
EST:     GAATGCTCAACCCAGATTCCAGTTCATTGTCATGAATCGCAGGAATACAG                         ATAATCTAGTTGAAGATCTTTTGGGAGATTTTGAATACCAACTACAAGCTC
genomic: GAATGCTCAACCCAGATTCCAGTTCATTGTCATGAATCGCAGGAATACAGgtattttatc ... ttgttaacagATAATCTAGTTGAAGATCTTTTGGGAGATTTTGAATACCAACTACAAGCTC
EST: gi|211393952|gb|FK987388.1|FK987388
EST:     GAATGCTCAACCCAGATTCCAGTTCAT-GTCATGAATCGCAGGAATACAG                         ATNATCTAGTTGAAGATCTTTTGGGAGATTTTGAATACCAACTACAAGCTC
genomic: GAATGCTCAACCCAGATTCCAGTTCATTGTCATGAATCGCAGGAATACAGgtattttatc ... ttgttaacagATAATCTAGTTGAAGATCTTTTGGGAGATTTTGAATACCAACTACAAGCTC
EST: gi|37419345|gb|CF647353.1|CF647353
EST:     GAATGCTCAACCCAGATTCCAGTTCATTGTCATGAATCGCAGGAATACAG                         ATAATCTAGTTGAAGATCTTTTGGGAGATTTTGAATACCAACTACAAGCTC
genomic: GAATGCTCAACCCAGATTCCAGTTCATTGTCATGAATCGCAGGAATACAGgtattttatc ... ttgttaacagATAATCTAGTTGAAGATCTTTTGGGAGATTTTGAATACCAACTACAAGCTC
EST: gi|13125936|gb|BG316611.1|BG316611
EST:     GAATGCTCAACCCAGATTCCAGTTCATTGTCATGAATCGCAGGAATACAG                         ATAATCTAGTTGAAGATCTTTTGGGAGATTTTGAATACCAACTACAAGCTC
genomic: GAATGCTCAACCCAGATTCCAGTTCATTGTCATGAATCGCAGGAATACAGgtattttatc ... ttgttaacagATAATCTAGTTGAAGATCTTTTGGGAGATTTTGAATACCAACTACAAGCTC
EST: gi|91056521|gb|EB166939.1|EB166939
EST:     GAATGCTCAACCCAGATTCCAGTTCATTGTCATGAATCGCAGGAATACAG                         ATAATCTAGTTGAAGATCTTTTGGGAGATTTTGAATACCAACTACAAGCTC
genomic: GAATGCTCAACCCAGATTCCAGTTCATTGTCATGAATCGCAGGAATACAGgtattttatc ... ttgttaacagATAATCTAGTTGAAGATCTTTTGGGAGATTTTGAATACCAACTACAAGCTC
EST: gi|211391326|gb|FK987375.1|FK987375
EST:     GAATGCTCAACCCAGATTCCAGTTCATTGTCATGAATCGCAGGAATACAG                         ATAATCTAGTTGAAGATCTTTTGGGAGATTTTGAATACCAACTACAAGCTC
genomic: GAATGCTCAACCCAGATTCCAGTTCATTGTCATGAATCGCAGGAATACAGgtattttatc ... ttgttaacagATAATCTAGTTGAAGATCTTTTGGGAGATTTTGAATACCAACTACAAGCTC
EST: gi|211393953|gb|FK987389.1|FK987389
EST:     GAATGCTCAACCCAGATTCCAGTTCAT-GTCATGAATCGCAGGAATACAG                         ATAATCTAGTTGAAGA
genomic: GAATGCTCAACCCAGATTCCAGTTCATTGTCATGAATCGCAGGAATACAGgtattttatc ... ttgttaacagATAATCTAGTTGAAGA
EST: gi|76928738|gb|DV171746.1|DV171746
EST:     GAATGCTCAACCCAGATTCCAGTTCATTGTCATGAATCGCAGGAATACAG                         ATAATCTAGTTGAAGATCTTTTGGGAGATTTTGAATACCAACTACAAGCTC
genomic: GAATGCTCAACCCAGATTCCAGTTCATTGTCATGAATCGCAGGAATACAGgtattttatc ... ttgttaacagATAATCTAGTTGAAGATCTTTTGGGAGATTTTGAATACCAACTACAAGCTC
EST: gi|93281394|gb|EB673658.1|EB673658
EST:     GAATGCTCAACCCAGATTCCAGTTCATTGTCATGAATCGCAGGAATACAG                         ATAATCTAGTTGAAGATCTTTTGGGAGATTTTGAATACCAACTACAAGCTC
genomic: GAATGCTCAACCCAGATTCCAGTTCATTGTCATGAATCGCAGGAATACAGgtattttatc ... ttgttaacagATAATCTAGTTGAAGATCTTTTGGGAGATTTTGAATACCAACTACAAGCTC
EST: gi|211393955|gb|FK987391.1|FK987391
EST:     GAATGCTCAACCCAGATTCCAGTTCATTGTCATGAATCGCAGGAATACAG                         ATAATCTAGTTGAAGATCTTTTTGGGAGATTTTGAATACCAACTACAAGCT
genomic: GAATGCTCAACCCAGATTCCAGTTCATTGTCATGAATCGCAGGAATACAGgtattttatc ... ttgttaacagATAATCTAGTTGAAGATCTTTT-GGGAGATTTTGAATACCAACTACAAGCT
EST: gi|76010496|gb|DT937666.1|DT937666
EST:     GAATGCTCAACCCAGATTCCAGTTCATTGTCATGAATCGCAGGAATACAG                         ATAATCTAGTTGAAGATCTTTTGGGAGATTTTGAATACCAACTACAAGCTC
genomic: GAATGCTCAACCCAGATTCCAGTTCATTGTCATGAATCGCAGGAATACAGgtattttatc ... ttgttaacagATAATCTAGTTGAAGATCTTTTGGGAGATTTTGAATACCAACTACAAGCTC
EST: gi|7304674|gb|AW600613.1|AW600613
EST:     GAATGCTCAACCCAGATTCCAGTTCATTGTCATGAATCGCAGGAATACAG                         ATAATCTAGTTGAAGATCTTTTGGGAGATTTTGAATACCAACTACAAGCTC
genomic: GAATGCTCAACCCAGATTCCAGTTCATTGTCATGAATCGCAGGAATACAGgtattttatc ... ttgttaacagATAATCTAGTTGAAGATCTTTTGGGAGATTTTGAATACCAACTACAAGCTC
EST: gi|211393947|gb|FK987383.1|FK987383
EST:     GAATGCTCAACCCAGATTCCAGTTCATCGTCATGAATCGCAGGAATACAG                         ATAATCTAGTTGAAGATCTTTTGGGAGATTT-GAATACCAACTACAAGCTC
genomic: GAATGCTCAACCCAGATTCCAGTTCATTGTCATGAATCGCAGGAATACAGgtattttatc ... ttgttaacagATAATCTAGTTGAAGATCTTTTGGGAGATTTTGAATACCAACTACAAGCTC
EST: gi|211391329|gb|FK987378.1|FK987378
EST:     GAATGCTCAACCCAGATTCCAGTTCATTGTCATGAATCGCAGGAATACAG                         ATAATCTAGTTGAAGATCTTTTGGG
genomic: GAATGCTCAACCCAGATTCCAGTTCATTGTCATGAATCGCAGGAATACAGgtattttatc ... ttgttaacagATAATCTAGTTGAAGATCTTTTGGG
EST: gi|76909432|gb|DV163378.1|DV163378
EST:     GAATGCTCAACCCAGATTCCAGTTCATTGTCATGAATCGCAGGAATACAG                         ATAATCTAGTTGAAGATCTTTTGGGAGATTTTGAATACCAACTACAAGCTC
genomic: GAATGCTCAACCCAGATTCCAGTTCATTGTCATGAATCGCAGGAATACAGgtattttatc ... ttgttaacagATAATCTAGTTGAAGATCTTTTGGGAGATTTTGAATACCAACTACAAGCTC
EST: gi|91048464|gb|EB158882.1|EB158882
EST:     GAATGCTCAACCCAGATTCCAGTTCATTGTCATGAATCGCAGGAATACAG                         ATAATCTAGTTGAAGATCTTTTGGGAGATTTTGAATACCAACTACAAGCTC
genomic: GAATGCTCAACCCAGATTCCAGTTCATTGTCATGAATCGCAGGAATACAGgtattttatc ... ttgttaacagATAATCTAGTTGAAGATCTTTTGGGAGATTTTGAATACCAACTACAAGCTC
EST: gi|76011730|gb|DT938900.1|DT938900
EST:     GAATGCTCAACCCAGATTCCAGTTCATTGTCATGAATCGCAGGAATACAG                         ATAATCTAGTTGAAGATCTTTTGGGAGATTTTGAATACCAACTACAAGCTC
genomic: GAATGCTCAACCCAGATTCCAGTTCATTGTCATGAATCGCAGGAATACAGgtattttatc ... ttgttaacagATAATCTAGTTGAAGATCTTTTGGGAGATTTTGAATACCAACTACAAGCTC
EST: gi|89758076|gb|DY687416.1|DY687416
EST:     GAATGCTCAACCCAGATTCCAGTTCATTGTCATGAATCGCAGGAATACAG                         ATAATCTAGTTGAAGATCTTTTGGGAGATTTTGAATACCAACTACAAGCTC
genomic: GAATGCTCAACCCAGATTCCAGTTCATTGTCATGAATCGCAGGAATACAGgtattttatc ... ttgttaacagATAATCTAGTTGAAGATCTTTTGGGAGATTTTGAATACCAACTACAAGCTC
EST: gi|211393949|gb|FK987385.1|FK987385
EST:     AATGCTCAACCCAGGATTCCAGTTCATTGTCATGAATCGCAGGAATACAG                         ATAATCTAGTTGAAGATCTTTTGGGAGATTTTGAATACCAACTACAAGCTC
genomic: AATGCTCAACCCAG-ATTCCAGTTCATTGTCATGAATCGCAGGAATACAGgtattttatc ... ttgttaacagATAATCTAGTTGAAGATCTTTTGGGAGATTTTGAATACCAACTACAAGCTC
EST: gi|211393951|gb|FK987387.1|FK987387
EST:     GAATGCTCAACCCAGATTCCAGTTCATGGTCATGAATCGCAGGAATACAG                         ATAATCTAGTTGAAGATCTTTTGGGAGATTTTGAATACCAACTACAAGCTC
genomic: GAATGCTCAACCCAGATTCCAGTTCATTGTCATGAATCGCAGGAATACAGgtattttatc ... ttgttaacagATAATCTAGTTGAAGATCTTTTGGGAGATTTTGAATACCAACTACAAGCTC
EST: gi|149112671|gb|EE191401.2|EE191401
EST:     GAATGCTCAACCCAGATTCCAGTTCATTGTCATGAATCGCAGGAATACAG                         ATAATCTAGTTGAAGATCTTTTGGGAGATTTTGAATACCAACTACAAGCTC
genomic: GAATGCTCAACCCAGATTCCAGTTCATTGTCATGAATCGCAGGAATACAGgtattttatc ... ttgttaacagATAATCTAGTTGAAGATCTTTTGGGAGATTTTGAATACCAACTACAAGCTC
EST: gi|148999366|gb|EE036307.2|EE036307
EST:     GAATGCTCAACCCAGATTCCAGTTCATTGTCATGAATCGCAGGAATACAG                         ATAATCTAGTTGAAGATCTTTTGGGAGATTTTGAATACCAACTACAAGCTC
genomic: GAATGCTCAACCCAGATTCCAGTTCATTGTCATGAATCGCAGGAATACAGgtattttatc ... ttgttaacagATAATCTAGTTGAAGATCTTTTGGGAGATTTTGAATACCAACTACAAGCTC
EST: gi|211393954|gb|FK987390.1|FK987390
EST:     GAATGCTCAACCCAGATTCCAGTTCATTGTCATGAATCGCAGGAATACAG                         ATAATCTAGTTGAAGATCTTTTGGGAGATTTTGAATACCAAC
genomic: GAATGCTCAACCCAGATTCCAGTTCATTGTCATGAATCGCAGGAATACAGgtattttatc ... ttgttaacagATAATCTAGTTGAAGATCTTTTGGGAGATTTTGAATACCAAC
EST: gi|211393950|gb|FK987386.1|FK987386
EST:     GAATGCTCAACCCAGATTCCAGTTCATTGTCATGAATCGCAGGAATACAG                         ATAATCTAGTTGAAGATCTTTTGGGAGATTTTGAATACCAACTACAAGCTC
genomic: GAATGCTCAACCCAGATTCCAGTTCATTGTCATGAATCGCAGGAATACAGgtattttatc ... ttgttaacagATAATCTAGTTGAAGATCTTTTGGGAGATTTTGAATACCAACTACAAGCTC
EST: gi|78114665|gb|DV533053.1|DV533053
EST:     GAATGCTCAACCCAGATTCCAGTTCATTGTCATGAATCGCAGGAATACAG                         ATAATCTAGTTGAAGATCTTTTGGGAGATTTTGAATACCAACTACAAGCTC
genomic: GAATGCTCAACCCAGATTCCAGTTCATTGTCATGAATCGCAGGAATACAGgtattttatc ... ttgttaacagATAATCTAGTTGAAGATCTTTTGGGAGATTTTGAATACCAACTACAAGCTC