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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAATCCGAGCAACATCCTATTCTTCTCATGAGATAGATGAGCAAGAAAATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGGgtattgtgcaacttcaacttcttaaaacattctaactctgttgattcttttatgtaaaacaactgtagatattattatatacttaccagctcaagagatg...

Basic information

species Zea mays
transcript GRMZM2G101571_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G101571_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g57510.4 (Oryza sativa), 5'ss of exon 3
TGGAATCCGAGCAACATCCTATTCTTCTCATGAGATAGATGAGCAAGAAAATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGGgtattgtgcaacttcaacttc------ttaaaacattctaa-ctctgttgattcttttatgtaaaacaactgt--agatattattatatacttaccagctcaagagatg
  ||||||| ||||||||||||||||| ||||||||||||||| | || ||||||  ||||||||||||| |||||||||| |||||||||||||||||||||   |||  | | |   |        | |      ||||  | ||    |    || || | ||  |||||   ||| || | | ||| | ||  |           
CAGAATCCGTGCAACATCCTATTCTTCACATGAGATAGATGAGAATGAGAATGATCAAGCTATTGATGGATTGCAGGATCGAGTCAGCATTCTCAAGCGGgtaagttgctgcgttattattggacgtctgatttgccctaagttttgccagtaaacttgtgaagaattactgttttgattttttgacataatcactcgta---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60345631|gb|DN212604.1|DN212604
EST:     ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGG                         TTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
genomic: ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGGgtattgtgca ... ttacctgtagTTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
EST: gi|37622088|gb|CF675141.1|CF675141
EST:     ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGG                         TTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
genomic: ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGGgtattgtgca ... ttacctgtagTTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
EST: gi|87154400|gb|DY399189.1|DY399189
EST:     ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGG                         TTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
genomic: ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGGgtattgtgca ... ttacctgtagTTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
EST: gi|92088107|gb|EB484338.1|EB484338
EST:     ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGG                         TTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
genomic: ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGGgtattgtgca ... ttacctgtagTTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
EST: gi|211216835|gb|FL144756.1|FL144756
EST:     ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGG                         TTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
genomic: ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGGgtattgtgca ... ttacctgtagTTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
EST: gi|78021287|gb|DV489674.1|DV489674
EST:     ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGG                         TTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
genomic: ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGGgtattgtgca ... ttacctgtagTTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
EST: gi|211304813|gb|FL144776.1|FL144776
EST:     ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGG                         TTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
genomic: ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGGgtattgtgca ... ttacctgtagTTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
EST: gi|33097946|gb|CF057906.1|CF057906
EST:     ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGG                         TTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
genomic: ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGGgtattgtgca ... ttacctgtagTTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
EST: gi|87155055|gb|DY399844.1|DY399844
EST:     ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGG                         TTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
genomic: ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGGgtattgtgca ... ttacctgtagTTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
EST: gi|32868635|gb|CF008317.1|CF008317
EST:     ATGGTGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGG                         TTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
genomic: ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGGgtattgtgca ... ttacctgtagTTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
EST: gi|74240317|gb|DT648231.1|DT648231
EST:     ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGG                         TTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
genomic: ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGGgtattgtgca ... ttacctgtagTTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
EST: gi|211216837|gb|FL144758.1|FL144758
EST:     ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGG                         TTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
genomic: ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGGgtattgtgca ... ttacctgtagTTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
EST: gi|211216833|gb|FL144754.1|FL144754
EST:     ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGG                         TTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
genomic: ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGGgtattgtgca ... ttacctgtagTTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
EST: gi|28910030|gb|CB331222.1|CB331222
EST:     ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGG                         TTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
genomic: ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGGgtattgtgca ... ttacctgtagTTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
EST: gi|211306828|gb|FL144778.1|FL144778
EST:     ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCATCATTCTCAAGCGG                         TTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
genomic: ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGGgtattgtgca ... ttacctgtagTTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
EST: gi|93281723|gb|EB673987.1|EB673987
EST:     ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGG                         TTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
genomic: ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGGgtattgtgca ... ttacctgtagTTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
EST: gi|211304811|gb|FL144774.1|FL144774
EST:     ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGG                         TTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
genomic: ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGGgtattgtgca ... ttacctgtagTTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
EST: gi|211304800|gb|FL144763.1|FL144763
EST:     ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGG                         TTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
genomic: ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGGgtattgtgca ... ttacctgtagTTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
EST: gi|5871387|gb|AW017858.1|AW017858
EST:     ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGG                         TTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
genomic: ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGGgtattgtgca ... ttacctgtagTTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
EST: gi|211304807|gb|FL144770.1|FL144770
EST:     ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGG                         TTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
genomic: ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGGgtattgtgca ... ttacctgtagTTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
EST: gi|6031335|gb|AW076192.1|AW076192
EST:     GTGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGG                         TTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
genomic: ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGGgtattgtgca ... ttacctgtagTTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
EST: gi|211304806|gb|FL144769.1|FL144769
EST:     ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGG                         TTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
genomic: ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGGgtattgtgca ... ttacctgtagTTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
EST: gi|21394168|gb|BQ538598.1|BQ538598
EST:     ATCGTGTCAGCATTCTCAAGCGG                         TTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
genomic: ATCGTGTCAGCATTCTCAAGCGGgtattgtgca ... ttacctgtagTTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
EST: gi|26455131|gb|CA826714.1|CA826714
EST:     ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGG                         TTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
genomic: ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGGgtattgtgca ... ttacctgtagTTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
EST: gi|211304808|gb|FL144771.1|FL144771
EST:     ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGG                         TTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
genomic: ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGGgtattgtgca ... ttacctgtagTTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
EST: gi|60348036|gb|DN215009.1|DN215009
EST:     ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGG                         TTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
genomic: ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGGgtattgtgca ... ttacctgtagTTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
EST: gi|33093600|gb|CF053594.1|CF053594
EST:     ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGG                         TTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
genomic: ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGGgtattgtgca ... ttacctgtagTTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
EST: gi|22546781|gb|BU099092.1|BU099092
EST:     ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGG                         TTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
genomic: ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGGgtattgtgca ... ttacctgtagTTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
EST: gi|60343725|gb|DN210698.1|DN210698
EST:     ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGG                         TTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
genomic: ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGGgtattgtgca ... ttacctgtagTTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
EST: gi|211304809|gb|FL144772.1|FL144772
EST:     ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGG                         TTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
genomic: ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGGgtattgtgca ... ttacctgtagTTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
EST: gi|211216840|gb|FL144761.1|FL144761
EST:     ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGG                         TTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
genomic: ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGGgtattgtgca ... ttacctgtagTTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
EST: gi|211306827|gb|FL144777.1|FL144777
EST:     ATGATGGAGCTATTGATGGACTCCAGGATCGTGTCAGCATTCTCAAGCGG                         TTGTYAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
genomic: ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGGgtattgtgca ... ttacctgtagTTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
EST: gi|211304812|gb|FL144775.1|FL144775
EST:     ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGG                         TTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
genomic: ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGGgtattgtgca ... ttacctgtagTTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
EST: gi|211304803|gb|FL144766.1|FL144766
EST:     ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGG                         TTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCCGGAC
genomic: ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGGgtattgtgca ... ttacctgtagTTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
EST: gi|211216832|gb|FL144753.1|FL144753
EST:     ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGG                         TTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
genomic: ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGGgtattgtgca ... ttacctgtagTTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
EST: gi|71328891|gb|DR801128.1|DR801128
EST:     ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGG                         TTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
genomic: ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGGgtattgtgca ... ttacctgtagTTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
EST: gi|211216839|gb|FL144760.1|FL144760
EST:     ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGG                         TTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
genomic: ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGGgtattgtgca ... ttacctgtagTTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
EST: gi|211216836|gb|FL144757.1|FL144757
EST:     ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGG                         TTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
genomic: ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGGgtattgtgca ... ttacctgtagTTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
EST: gi|211304801|gb|FL144764.1|FL144764
EST:     ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGG                         TTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
genomic: ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGGgtattgtgca ... ttacctgtagTTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
EST: gi|28910937|gb|CB331689.1|CB331689
EST:     ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTTTCAAGCGG                         TTGTCAGGCGATATCCCTGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
genomic: ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGGgtattgtgca ... ttacctgtagTTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
EST: gi|30160483|gb|CB924212.1|CB924212
EST:     ATGATGGAGCTGTTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGG                         TTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
genomic: ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGGgtattgtgca ... ttacctgtagTTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
EST: gi|211304805|gb|FL144768.1|FL144768
EST:     ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGG                         TTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC
genomic: ATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGGgtattgtgca ... ttacctgtagTTGTCAGGCGATATCCATGAAGAGGTGGAGACTCATAACAGAATGCTGGAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGAATCCGAGCAACATCCTATTCTTCTCATGAGATAGATGAGCAAGAAAATGATGGAGCTATTGATGGACTGCAGGATCGTGTCAGCATTCTCAAGCGGgtattgtgcaacttcaacttcttaaaacattctaactctgttgattcttttatgtaaaacaactgtagatattattatatacttaccagctcaagagatg

- - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG