1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CAATCTATTTGGAGGCAGTGGCTATTCTCCCACAATTAGTGTTGCTCCAGAGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGGgtacgttttttacttcttgtcggcaatttgctgtttttctgaacacatctgttgtattcaaagcctgctatagtgctatccggtaaaggtccattactcc...
species | Zea mays |
transcript | GRMZM2G101413_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGG GGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCACGGAEST: gi|76914884|gb|DV165734.1|DV165734
genomic: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGGgtacgttttt ... tatttttcagGGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCACGGA
EST: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGG GGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCACGGAEST: gi|12971772|gb|BG267650.1|BG267650
genomic: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGGgtacgttttt ... tatttttcagGGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCACGGA
EST: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGG GGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCACGGAEST: gi|71332207|gb|DR803027.1|DR803027
genomic: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGGgtacgttttt ... tatttttcagGGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCACGGA
EST: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGG GGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCACGGAEST: gi|91874972|gb|EB404929.1|EB404929
genomic: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGGgtacgttttt ... tatttttcagGGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCACGGA
EST: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGG GGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCCCGGAEST: gi|76014786|gb|DT941956.1|DT941956
genomic: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGGgtacgttttt ... tatttttcagGGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCACGGA
EST: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGG GGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCACGGAEST: gi|71332206|gb|DR803026.1|DR803026
genomic: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGGgtacgttttt ... tatttttcagGGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCACGGA
EST: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGG GGCCTACCGTGCGTTTTACATTTTAAACTGGATTTATCGTTATTTCACGGAEST: gi|18181443|gb|BM382653.1|BM382653
genomic: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGGgtacgttttt ... tatttttcagGGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCACGGA
EST: TAACTTAACTGGACAATATGTTTTCTTCCTTGG GGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCACGGAEST: gi|87157131|gb|DY401920.1|DY401920
genomic: TAACTTAACTGGACAATATGTTTTCTTCCTTGGgtacgttttt ... tatttttcagGGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCACGGA
EST: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGG GGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCACGGAEST: gi|101390410|gb|EB817139.1|EB817139
genomic: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGGgtacgttttt ... tatttttcagGGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCACGGA
EST: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGG GGCCTGCCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCACGGAEST: gi|113702315|gb|EE679819.1|EE679819
genomic: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGGgtacgttttt ... tatttttcagGGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCACGGA
EST: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGG GGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCACGGAEST: gi|211107241|gb|FL370796.1|FL370796
genomic: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGGgtacgttttt ... tatttttcagGGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCACGGA
EST: AGAAGCAGAGATGTGGATAACTTAACTGGACAATATGTTTTCCTCCGTGG GGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCNGT-ATTTCACGGEST: gi|18180216|gb|BM381426.1|BM381426
genomic: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGGgtacgttttt ... tatttttcagGGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATC-GTTATTTCACGG
EST: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGG GGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCACGGAEST: gi|211215315|gb|FL417122.1|FL417122
genomic: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGGgtacgttttt ... tatttttcagGGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCACGGA
EST: AGAA-CAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGG GGGCTACCGTGCGTTTTCCATTCTAA-CTGGATT-ATCGTTATTTCACGGAEST: gi|211199199|gb|FL385609.1|FL385609
genomic: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGGgtacgttttt ... tatttttcagGGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCACGGA
EST: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGG GGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCACGGAEST: gi|211009339|gb|FL418571.1|FL418571
genomic: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGGgtacgttttt ... tatttttcagGGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCACGGA
EST: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGG GGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCACGGAEST: gi|76012114|gb|DT939284.1|DT939284
genomic: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGGgtacgttttt ... tatttttcagGGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCACGGA
EST: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGG GGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCACGGAEST: gi|211060163|gb|FL397358.1|FL397358
genomic: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGGgtacgttttt ... tatttttcagGGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCACGGA
EST: GAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCNTTGG GGCCTACCGTGCGTTTTACAT-CTAAACTGGATTTATCCGT-ATTTCACGEST: gi|149082455|gb|EE171645.2|EE171645
genomic: GAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCC-TTGGgtacgttttt ... tatttttcagGGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATC-GTTATTTCACG
EST: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGG GGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCACGGAEST: gi|50332292|gb|CO527418.1|CO527418
genomic: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGGgtacgttttt ... tatttttcagGGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCACGGA
EST: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGG GGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCACGGAEST: gi|211299206|gb|FL414893.1|FL414893
genomic: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGGgtacgttttt ... tatttttcagGGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCACGGA
EST: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGG GGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCACGGAEST: gi|148943936|gb|EC889016.2|EC889016
genomic: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGGgtacgttttt ... tatttttcagGGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCACGGA
EST: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGG GGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCACGGAEST: gi|74243070|gb|DT650984.1|DT650984
genomic: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGGgtacgttttt ... tatttttcagGGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCACGGA
EST: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGG GGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCACGGAEST: gi|4647085|gb|AI622160.1|AI622160
genomic: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGGgtacgttttt ... tatttttcagGGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCACGGA
EST: AGAAGCAGAAATGTGGATAACTTAACTGGNCAATATGTTTTCTTCCTTGG GGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCACGGAEST: gi|67014344|gb|CO443093.1|CO443093
genomic: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGGgtacgttttt ... tatttttcagGGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCACGGA
EST: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGG GGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCACGGAEST: gi|60358513|gb|DN225486.1|DN225486
genomic: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGGgtacgttttt ... tatttttcagGGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCACGGA
EST: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGG GGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCACGGAEST: gi|148943937|gb|EC889017.2|EC889017
genomic: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGGgtacgttttt ... tatttttcagGGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCACGGA
EST: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGG GGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCACGGAEST: gi|9743078|gb|BE519226.1|BE519226
genomic: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGGgtacgttttt ... tatttttcagGGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCACGGA
EST: AGAAGCAGAAATGTGGATAACTTAACTGGCCAATATGTTTTCTTCCTTGG GGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCCACGGEST: gi|211119295|gb|FL407774.1|FL407774
genomic: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGGgtacgttttt ... tatttttcagGGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTT-CACGG
EST: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGG GGCCTACCGTGCGNTTTACATTCTAAACTGGATTTATCGTTATTTCACGGAEST: gi|76012125|gb|DT939295.1|DT939295
genomic: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGGgtacgttttt ... tatttttcagGGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCACGGA
EST: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGG GGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCACGGAEST: gi|148990937|gb|EE032363.2|EE032363
genomic: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGGgtacgttttt ... tatttttcagGGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCACGGA
EST: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGG GGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCACGGAEST: gi|101390412|gb|EB817140.1|EB817140
genomic: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGGgtacgttttt ... tatttttcagGGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCACGGA
EST: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGG GGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCACGGA
genomic: AGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGGgtacgttttt ... tatttttcagGGCCTACCGTGCGTTTTACATTCTAAACTGGATTTATCGTTATTTCACGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAATCTATTTGGAGGCAGTGGCTATTCTCCCACAATTAGTGTTGCTCCAGAGAAGCAGAAATGTGGATAACTTAACTGGACAATATGTTTTCTTCCTTGGgtacgttttttacttcttgtcggcaatttgctgtttttctgaacacatctgttgtattcaaagcctgctatagtgctatccggtaaaggtccattactcc
- - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC