Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCTGTGCCAGAGAACAGTTCCACTGGTTACTTGTTGATTGCTACTAGTGGGGGCCTGAATCAGCAGCGCATAGGGgtatgattgccttccaatgtctggttgatttgtttttatcatcccttgtgttacctttatgatgttcagcttgcag

Basic information

species Zea mays
transcript GRMZM2G101181_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G101181_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os04g46570.1 (Oryza sativa), 5'ss of exon 3
CTGCTGTGCCAGAGAACAGTTCCACTGGTTACTTGTTGATTGCTACTAGTGGGGGCCTGAATCAGCAGCGCATAGGGgtatgattgccttccaatgtctggttgatttgtttt-tatcatcccttgtgttacctttatgatgttcagcttgcag
|||||||||| ||||||||||| |||||||||||| |||||| |||||| ||||| || |||||||||||||||||||||  | ||  || |||  | |  |||  ||| ||| ||| |||| |||| ||||| ||| ||| ||||| || |||
CTGCTGTGCCGGAGAACAGTTCTACTGGTTACTTGCTGATTGGTACTAGCGGGGGACTAAATCAGCAGCGCATAGGGgtacaactgtatttcaactttttattgcgttgctttgtattatccattgtattaccattacgatcttcagtttccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211413345|gb|FL280504.1|FL280504
EST:     GTTACTTGTTGATTGCTACTAGTGGGGGCCTGAATCAGCAGCGCATAGGG                         ATAACAGATGCTGTTGTAGTTGCCTGGATTTTGAATGCCACACTTGTTTGT
genomic: GTTACTTGTTGATTGCTACTAGTGGGGGCCTGAATCAGCAGCGCATAGGGgtatgattgc ... cagcttgcagATAACAGATGCTGTTGTAGTTGCCTGGATTTTGAATGCCACACTTGTT-GT
EST: gi|67022216|gb|CO450965.1|CO450965
EST:     GTTACTTGTTGATTGCTACTAGTGGGGGCCTGAATCANCAGCGCATAGGG                         ATAACAGATGCTGTTGTAGTTGCCTGGATTTTGAATGCCACACTTGTTGTA
genomic: GTTACTTGTTGATTGCTACTAGTGGGGGCCTGAATCAGCAGCGCATAGGGgtatgattgc ... cagcttgcagATAACAGATGCTGTTGTAGTTGCCTGGATTTTGAATGCCACACTTGTTGTA
EST: gi|76282456|gb|DV022024.1|DV022024
EST:     GTTACTTGTTGATTGCTACTAGTGGGGGCCTGAATCAGCAGCGCATAGGG                         C
genomic: GTTACTTGTTGATTGCTACTAGTGGGGGCCTGAATCAGCAGCGCATAGGGgtatgattgc ... cagcttgcag-
EST: gi|76282456|gb|DV022024.1|DV022024
EST:     GTTACTTGTTGATTGCTACTAGTGGGGGCCTGAATCAGCAGCGCATAGGG                         C
genomic: GTTACTTGTTGATTGCTACTAGTGGGGGCCTGAATCAGCAGCGCATAGGGgtatgattgc ... cagcttgcag-
EST: gi|76282456|gb|DV022024.1|DV022024
EST:     GTTACTTGTTGATTGCTACTAGTGGGGGCCTGAATCAGCAGCGCATAGGG                         C
genomic: GTTACTTGTTGATTGCTACTAGTGGGGGCCTGAATCAGCAGCGCATAGGGgtatgattgc ... cagcttgcag-
EST: gi|76282456|gb|DV022024.1|DV022024
EST:     GTTACTTGTTGATTGCTACTAGTGGGGGCCTGAATCAGCAGCGCATAGGG                         C
genomic: GTTACTTGTTGATTGCTACTAGTGGGGGCCTGAATCAGCAGCGCATAGGGgtatgattgc ... cagcttgcag-
EST: gi|76282456|gb|DV022024.1|DV022024
EST:     GTTACTTGTTGATTGCTACTAGTGGGGGCCTGAATCAGCAGCGCATAGGG                         C
genomic: GTTACTTGTTGATTGCTACTAGTGGGGGCCTGAATCAGCAGCGCATAGGGgtatgattgc ... cagcttgcag-
EST: gi|76282456|gb|DV022024.1|DV022024
EST:     GTTACTTGTTGATTGCTACTAGTGGGGGCCTGAATCAGCAGCGCATAGGG                         C
genomic: GTTACTTGTTGATTGCTACTAGTGGGGGCCTGAATCAGCAGCGCATAGGGgtatgattgc ... cagcttgcag-
EST: gi|148935747|gb|EC879791.2|EC879791
EST:     GTTACTTGTTGATTGCTACTAGTGGGGGCCTGAATCAGCAGCGCATAGGG                         ATAACAGATGCTGTTGTAGTTGCCTGGATTTTGAATGCCACACTTGTTGTA
genomic: GTTACTTGTTGATTGCTACTAGTGGGGGCCTGAATCAGCAGCGCATAGGGgtatgattgc ... cagcttgcagATAACAGATGCTGTTGTAGTTGCCTGGATTTTGAATGCCACACTTGTTGTA
EST: gi|211415883|gb|FL280506.1|FL280506
EST:     GTTACTTGTTGATTGCTACTAGTGGGGGCCTGAATCAGCAGCGCATAGGG                         ATNAACAGATGCTGTTGTAGTTGCCTGGAT
genomic: GTTACTTGTTGATTGCTACTAGTGGGGGCCTGAATCAGCAGCGCATAGGGgtatgattgc ... cagcttgcagAT-AACAGATGCTGTTGTAGTTGCCTGGAT