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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCTGTGCCAGAGAACAGTTCCACTGGTTACTTGTTGATTGCTACTAGTGGGGGCCTGAATCAGCAGCGCATAGGGgtatgattgccttccaatgtctggttgatttgtttttatcatcccttgtgttacctttatgatgttcagcttgcagataacagatgctgttgtag

Basic information

species Zea mays
transcript GRMZM2G101181_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G101181_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os04g46570.1 (Oryza sativa), 5'ss of exon 3
CTGCTGTGCCAGAGAACAGTTCCACTGGTTACTTGTTGATTGCTACTAGTGGGGGCCTGAATCAGCAGCGCATAGGGgtatgattgccttccaatgtctggttgatttgtttt-tatcatcccttgtgttacctttatgatgttcagcttgcagataacagatgctgttgtag
|||||||||| ||||||||||| |||||||||||| |||||| |||||| ||||| || |||||||||||||||||||||  | ||  || |||  | |  |||  ||| ||| ||| |||| |||| ||||| ||| ||| ||||| || |||                   
CTGCTGTGCCGGAGAACAGTTCTACTGGTTACTTGCTGATTGGTACTAGCGGGGGACTAAATCAGCAGCGCATAGGGgtacaactgtatttcaactttttattgcgttgctttgtattatccattgtattaccattacgatcttcagtttccag-------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32865075|gb|CF004757.1|CF004757
EST:     GTTACTTGTTGATTGCTACTAGTGGGGGCCTGAATCAGCAGCGCATAGGG                         TTGCCTGGATTTTGAATGCCACACTTGTTGTACCTGAGT
genomic: GTTACTTGTTGATTGCTACTAGTGGGGGCCTGAATCAGCAGCGCATAGGGgtatgattgc ... gctgttgtagTTGCCTGGATTTTGAATGCCACACTTGTTGTACCTGAGT