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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACCATAGATGATGATAATTTCATTGATGACACCGGGGTTGATCCAGCTGATCGTTATGGCAGTGATAATGAGCGGCATTCACCTGGGCATTATGCACAGgtattttttcttaattgtccaggtgccttacagcattaccattttgtattctttaagttgaattgtcatacaggctaaacaaatgtctgttggttaattg...

Basic information

species Zea mays
transcript GRMZM2G100881_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G100881_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g05420.1 (Oryza sativa), 5'ss of exon 3
AACCATAGATGATGATAATTTCATTGATGACACCGGGGTTGATCCAGCTGATCGTTATGGCAGTGATAATGAGCGGCATTCACCTGGGCATTATGCACAGgtattttttct--------taattgtccaggtgccttacagcattaccattttgtatt--ctttaagttgaattgtcatacaggctaaacaaatgtctgttggttaattg
|||| ||||||||||||| ||||||||||| || ||||||||||||||||| ||||||||||| ||||||||  | || |||||| |||||||  | |||||||   | ||        ||| |   ||| ||| || |||  |||  |||   | |    ||||  |  || |   ||  ||    || | |       |         
AACCTTAGATGATGATAACTTCATTGATGATACTGGGGTTGATCCAGCTGACCGTTATGGCAGCGATAATGATGGCCACTCACCTCGGCATTACCCTCAGgtatccatcctaacatccttaacttctcagatgcttttcag-gttattattgcatttcaagtttacatgaaaattatatggagaaggaaaagaaaggaaat---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78092723|gb|DV521097.1|DV521097
EST:     ATCGTTATGGCAGTGATAATGAGCGGCATTCACCTGGGCATTATGCACAG                         GCTGAGGAGGGTGAGGAGGATGATGAAATTGAGAGACTCTTCAAGGGTGGT
genomic: ATCGTTATGGCAGTGATAATGAGCGGCATTCACCTGGGCATTATGCACAGgtattttttc ... atgactatagGCTGAGGAGGGTGAGGAGGATGATGAAATTGAGAGACTCTTCAAGGGTGGT
EST: gi|8383117|gb|BE056000.1|BE056000
EST:     ATCGTTATGGCAGTGATAATGAGCGGTATTCACCTGGGCATTATGCACAG                         GCTGAGGAGGGTGAGGAGGATGATGAAATTGAGAGACTCTTCAAGGGTGGT
genomic: ATCGTTATGGCAGTGATAATGAGCGGCATTCACCTGGGCATTATGCACAGgtattttttc ... atgactatagGCTGAGGAGGGTGAGGAGGATGATGAAATTGAGAGACTCTTCAAGGGTGGT