Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTTGGCGCGCTTATCATAGCAAAGTTGCTCTGCGTCCCTCTGGTAATGTCATACCACACCCACGTTCCAATgtgagtttcgactgctgctctcacattcacatactgcttttcgccagcatacatgtaccactttctgctgttctgcacaagaactcattgtggaaccacaatcatatcctagtattttttacctgcacggctggatggagaactgacccttttgatcatggcag

Basic information

species Zea mays
transcript GRMZM2G100652_T04
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G100652_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os07g01030.1 (Oryza sativa), 5'ss of exon 4
GTATTTGGCGCGCTTATCATAGCAAAGTTGCTCTGCGTCCCTCTGGTAATGTCATACCACACCCACGTTCCAATgtgagtttcgactgctgctctcacattcacatactgcttttcgccagcatacatgtaccactttctgctgttctgcacaagaactcattgtggaaccacaatcatatcctagtattttttacctgcacggctggatggagaactgacccttttgatcatggcag
||||| || || || || || ||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||    |||  |   | |   |   |  | ||    | | ||      || ||   |     | |||   | |    ||| ||   | |  |      |                                                          
GTATTCGGTGCCCTAATAATTGCAAAGTTGCTCTGCGTCCCTCTAGTAATGTCGTACCACACCCATGTTCCAATgtgagtttcctgagctaatactaga---aggcaaagtttacgacaatcagtgcaatatcagcattgaagggtctctcccaag--tcactgcc-atcagctgcttca----------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67042909|gb|CO469164.1|CO469164
EST:     AAGTTGCTCTGCGTCCCTCTGGTAATGTCATACCACACCCACGTTCCAAT                         TTATATACCCAGATATACTTTCAGCTGGCTTGTCAAGCCCATGTGGCTAAT
genomic: AAGTTGCTCTGCGTCCCTCTGGTAATGTCATACCACACCCACGTTCCAATgtgagtttcg ... atcatggcagTTATATACCCAGATATACTTTCAGCTGGCTTGTCAAGCCCATGTGGCTAAT
EST: gi|78076032|gb|DV504466.1|DV504466
EST:     AAGTTGCTCTGCGTCCCTCTGGTAATGTCATACCACACCCACGTTCCAAT                         TTATATACCCAGATATACTTTCAGCTGGCTTGTCAAGCCCATGTGGCTAAT
genomic: AAGTTGCTCTGCGTCCCTCTGGTAATGTCATACCACACCCACGTTCCAATgtgagtttcg ... atcatggcagTTATATACCCAGATATACTTTCAGCTGGCTTGTCAAGCCCATGTGGCTAAT
EST: gi|87156413|gb|DY401202.1|DY401202
EST:     AAGTTGCTCTGCGTCCCTCTGGTAATGTCATACCACACCCACGTTCCAAT                         TTATATACCCAGATATACTTTCAGCTGGCTTGTCAAGCCCATGTGGCTAAT
genomic: AAGTTGCTCTGCGTCCCTCTGGTAATGTCATACCACACCCACGTTCCAATgtgagtttcg ... atcatggcagTTATATACCCAGATATACTTTCAGCTGGCTTGTCAAGCCCATGTGGCTAAT
EST: gi|26560034|gb|CA832269.1|CA832269
EST:     AAGTTGCTCTGCGTCCCTCTGGTAATGTCATACCACACCCACGTTCCAAT                         TTATATACCCAGATATACTTTCAGCTGGCTTGTCAAGCCCATGTGGCTAAT
genomic: AAGTTGCTCTGCGTCCCTCTGGTAATGTCATACCACACCCACGTTCCAATgtgagtttcg ... atcatggcagTTATATACCCAGATATACTTTCAGCTGGCTTGTCAAGCCCATGTGGCTAAT
EST: gi|91869857|gb|EB400576.1|EB400576
EST:     AAGTTGCTCTGCGTCCCTCTGGTAATGTCATACCACACCCACGTTCCAAT                         TTATATACCCAGATATACTTTCAGCTGGCTTGTCAAGCCCATGTGGCTAAT
genomic: AAGTTGCTCTGCGTCCCTCTGGTAATGTCATACCACACCCACGTTCCAATgtgagtttcg ... atcatggcagTTATATACCCAGATATACTTTCAGCTGGCTTGTCAAGCCCATGTGGCTAAT
EST: gi|148981111|gb|EE027429.2|EE027429
EST:     AAGTTGCTCTGCGTCCCTCTGGTAATGTCATACCACACCCACGTTCCAAT                         TTATATACCCAGATATACTTTCAGCTGGCTTGTCAAGCCCATGTGGCTAAT
genomic: AAGTTGCTCTGCGTCCCTCTGGTAATGTCATACCACACCCACGTTCCAATgtgagtttcg ... atcatggcagTTATATACCCAGATATACTTTCAGCTGGCTTGTCAAGCCCATGTGGCTAAT
EST: gi|22935606|gb|BU571881.1|BU571881
EST:     AAGTTGCTCTGCGTCCCTCTGGTAATGTCATACCACACCCACGTTCCAAT                         TTATATACCCAGATATACTTTCAGCTGGCTTGTCAAGCCCATGTGGCTAAT
genomic: AAGTTGCTCTGCGTCCCTCTGGTAATGTCATACCACACCCACGTTCCAATgtgagtttcg ... atcatggcagTTATATACCCAGATATACTTTCAGCTGGCTTGTCAAGCCCATGTGGCTAAT
EST: gi|89762164|gb|DY689888.1|DY689888
EST:     AAGTTGCTCTGCGTCCCTCTGGTAATGTCATACCACACCCACGTTCCCAT                         TTATATACCCAGATATACTTTCAGCTGGCTTGTCAAGCCCATGTGGCTAAT
genomic: AAGTTGCTCTGCGTCCCTCTGGTAATGTCATACCACACCCACGTTCCAATgtgagtttcg ... atcatggcagTTATATACCCAGATATACTTTCAGCTGGCTTGTCAAGCCCATGTGGCTAAT
EST: gi|86473030|gb|DY239400.1|DY239400
EST:     AAGTTGCTCTGCGTCCCTCTGGTAATGTCATACCACACCCACGTTCCAAT                         TTATATACCCAGATATACTTTCAGCTGGCTTGTCAAGCCCATGTGGCTAAT
genomic: AAGTTGCTCTGCGTCCCTCTGGTAATGTCATACCACACCCACGTTCCAATgtgagtttcg ... atcatggcagTTATATACCCAGATATACTTTCAGCTGGCTTGTCAAGCCCATGTGGCTAAT