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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTTGGCGCGCTTATCATAGCAAAGTTGCTCTGCGTCCCTCTGGTAATGTCATACCACACCCACGTTCCAATgtgagtttcgactgctgctctcacattcacatactgcttttcgccagcatacatgtaccactttctgctgttctgcacaagaactcattgtggaaccacaatcatatcctagtattttttacctgcacggctggatggagaactgacccttttgatcatggcag

Basic information

species Zea mays
transcript GRMZM2G100652_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G100652_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os07g01030.1 (Oryza sativa), 5'ss of exon 4
GTATTTGGCGCGCTTATCATAGCAAAGTTGCTCTGCGTCCCTCTGGTAATGTCATACCACACCCACGTTCCAATgtgagtttcgactgctgctctcacattcacatactgcttttcgccagcatacatgtaccactttctgctgttctgcacaagaactcattgtggaaccacaatcatatcctagtattttttacctgcacggctggatggagaactgacccttttgatcatggcag
||||| || || || || || ||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||    |||  |   | |   |   |  | ||    | | ||      || ||   |     | |||   | |    ||| ||   | |  |      |                                                          
GTATTCGGTGCCCTAATAATTGCAAAGTTGCTCTGCGTCCCTCTAGTAATGTCGTACCACACCCATGTTCCAATgtgagtttcctgagctaatactaga---aggcaaagtttacgacaatcagtgcaatatcagcattgaagggtctctcccaag--tcactgcc-atcagctgcttca----------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76282419|gb|DV021987.1|DV021987
EST:     AAGTTGCTCTGCGTCCCTCTGGTAATGTCATACCACACCCACGTTCCA-T                         TTATATACCCAGATATACTTTCAGCTGGCTTGTCAAGCCCAT
genomic: AAGTTGCTCTGCGTCCCTCTGGTAATGTCATACCACACCCACGTTCCAATgtgagtttcg ... atcatggcagTTATATACCCAGATATACTTTCAGCTGGCTTGTCAAGCCCAT