1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TTCTGGTCATGATCAGAATTATTATCTGCAAATGCTTGAAGCTGCATTCCACAAGCTTCCACAGCCCAAGGACTCTGAGCGTGCTAAAACTTACATTCCGgtatgggtttttgaaggacatgggtgccactgtgtactactccctctgtttcaaattataagatgctctgtcttttctagattcatagcttttgtgacgc...
species | Zea mays |
transcript | GRMZM2G100246_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTCCACAGCCCAAGGACTCTGAGCGTGCTAAAACTTACATTCCG CGGCACCCTGCAGTTACCCCTGCTAGCTACCCCCAAGTTCAGGCATCAATTEST: gi|211424247|gb|FK965923.1|FK965923
genomic: TTCCACAGCCCAAGGACTCTGAGCGTGCTAAAACTTACATTCCGgtatgggttt ... tcattttcagCGGCACCCTGCAGTTACCCCTGCTAGCTACCCCCAAGTTCAGGCATCAATT
EST: ACAAGCTTCCACAGCCCAAGGACTCTGAGCGTGCTAAAACTTACATTCCG CGGCACCCTGCAGTTACCCCTGCTAGCTACCCCCAAGTTCAGGCATCAATTEST: gi|74238445|gb|DT646359.1|DT646359
genomic: ACAAGCTTCCACAGCCCAAGGACTCTGAGCGTGCTAAAACTTACATTCCGgtatgggttt ... tcattttcagCGGCACCCTGCAGTTACCCCTGCTAGCTACCCCCAAGTTCAGGCATCAATT
EST: ACAAGCTTCCACAGCCCAAGGACTCTGAGCGTGCTAAAACTTACATTCCG CGGCACCCTGCAGTTACCCCTGCTAGCTACCCCCAAGTTCAGGCATCAATTEST: gi|9951952|gb|BE638535.1|BE638535
genomic: ACAAGCTTCCACAGCCCAAGGACTCTGAGCGTGCTAAAACTTACATTCCGgtatgggttt ... tcattttcagCGGCACCCTGCAGTTACCCCTGCTAGCTACCCCCAAGTTCAGGCATCAATT
EST: ACAAGCTTCCACAACCCAAGGACTCTGAGCGTGCTAAAACTTACATTCCG GGGCACCCTGCAGTTACCCCTGCTAGCTACCCCCAAGTTCAGGCATCAATT
genomic: ACAAGCTTCCACAGCCCAAGGACTCTGAGCGTGCTAAAACTTACATTCCGgtatgggttt ... tcattttcagCGGCACCCTGCAGTTACCCCTGCTAGCTACCCCCAAGTTCAGGCATCAATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCTGGTCATGATCAGAATTATTATCTGCAAATGCTTGAAGCTGCATTCCACAAGCTTCCACAGCCCAAGGACTCTGAGCGTGCTAAAACTTACATTCCGgtatgggtttttgaaggacatgggtgccactgtgtactactccctctgtttcaaattataagatgctctgtcttttctagattcatagcttttgtgacgc
- - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actccctc