ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq

Sequence

atgc intronic sequence ATGC exonic sequence

GTAGGTTACTAACTGCACTTGTATGCGAATACTTGGAGTGGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgataactggtgaccattcctaatatttcgtttttgcattttggaaatcaacatccattaatgtctccctgtctgtttgtaaatcag

Basic information

species	Zea mays
transcript	GRMZM2G099980_T03
intron #	3
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G099980_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os12g01170.1 (Oryza sativa), 5'ss of exon 3

GTAGGTTACTAACTGCACTTGTATGCGAATACTTGGAGTGGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgataactggtgaccattcctaatatttcgtttttgcattttggaaatcaacatccattaatgtctcc--------ctgtctg-----tttgtaaatcag
|||||||| |||| ||||||||| | ||||||||||||||||| || ||||||||||| |||||||||||  |||| || ||||| |||||||     |  | |  |    || ||| || | |  |    || |   |||||||||||   |||||   |          || |||     ||||||||||||
GTAGGTTATTAACAGCACTTGTAAGTGAATACTTGGAGTGGGCCCAGCTAAGTCACACGATGAAAGTTTATCTGCCTGAATGTAATCTGgtaa----cagtttgccatatctcataa-atcttggatggatatgtccaaaatcaacatctgctaatgctgctattgattgttggctgttgcatttgtaaatcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|211054006|gb|FL385558.1|FL385558

EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA

EST: gi|211452567|gb|FL415951.1|FL415951

EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA

EST: gi|211080223|gb|FL420001.1|FL420001

EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA

EST: gi|211466208|gb|FL385420.1|FL385420

EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA

EST: gi|211203962|gb|FL369985.1|FL369985

EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA

EST: gi|32910631|gb|CF015443.1|CF015443

EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA

EST: gi|211042377|gb|FL397272.1|FL397272

EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA

EST: gi|211330509|gb|FL416285.1|FL416285

EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA

EST: gi|211501608|gb|FL378289.1|FL378289

EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA

EST: gi|211020467|gb|FL418619.1|FL418619

EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAA
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAA

EST: gi|211022189|gb|FL381966.1|FL381966

EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCT
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCT

EST: gi|211159520|gb|FL378584.1|FL378584

EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAA
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAA

EST: gi|211523925|gb|FL381024.1|FL381024

EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGAC
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGAC

EST: gi|211204242|gb|FL383411.1|FL383411

EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA

EST: gi|211194591|gb|FL404838.1|FL404838

EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAAGACTTCTCTAACAAAAGTGG
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAA-GACTTCTCTAACAAAAGTGG

EST: gi|211269442|gb|FL420605.1|FL420605

EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTANCCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAG
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAG

EST: gi|78109085|gb|DV527502.1|DV527502

EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA

EST: gi|211147508|gb|FL408670.1|FL408670

EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAAC
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAAC

EST: gi|211212936|gb|FL424466.1|FL424466

EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA

EST: gi|33103991|gb|CF063951.1|CF063951

EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA

EST: gi|211471762|gb|FL410798.1|FL410798

EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGT
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGT

EST: gi|211276957|gb|FL388228.1|FL388228

EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA

EST: gi|108953992|gb|EC364964.1|EC364964

EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA

EST: gi|211051698|gb|FL411698.1|FL411698

EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAAC
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAAC

EST: gi|211355668|gb|FL392110.1|FL392110

EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAA
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAA

EST: gi|211186886|gb|FL377630.1|FL377630

EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA

EST: gi|211490263|gb|FL376582.1|FL376582

EST:     GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG                         CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: GGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 490

GTAGGTTACTAACTGCACTTGTATGCGAATACTTGGAGTGGGCGCAACTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaagtgata ... tgtaaatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGAGCTGAAGGGAGCAGGAGTGCTGAAAGTGGTCCAATGCTTTTAGATGTTC

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 174

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 160