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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTTGGTGAAGTTGATCGGATATTGCTGCGAAGATGACCATCGGCTGCTTGTCTACGAGTTCATGTTTCGAGGAAGTCTAGAAAACCACTTATTCCGAAgtaaaccttctgctcctgttatgctgtttgtcagagtgtgaatgacatcatcaccgagttcagtgctgccacttttttacttaatgtcttctgttttccc...

Basic information

species Zea mays
transcript GRMZM2G099754_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G099754_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os11g02830.2 (Oryza sativa), 5'ss of exon 3
AATTTGGTGAAGTTGATCGGATATTGCTGCGAAGATGACCATCGGCTGCTTGTCTACGAGTTCATGTTTCGAGGAAGTCTAGAAAACCACTTATTCCGAAgtaaaccttctgctcctgttatgctgtttgtcagagtgtgaatgacatcatcaccgagt----tcagtgctgccacttttttacttaatgtcttctgttttccc----
||||| || |||||||| || ||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||   | |  ||||| ||          |||     ||||||| |||||  | || |    || ||| |  |||||||| | |  || | ||    | |       
AATTTAGTCAAGTTGATTGGGTATTGCTGCGAAGATGACCACAGGCTGCTTGTGTACGAGTTCATGTTTCGAGGAAGTCTAGAAAACCACTTATTCCGAAgtaagaatccaactcctttt--------catcacttcatgaatgatatcatggctgaatagtttctgtgatcacactttttaaatatatatgtttctctctataatgc

upper sequence: GRMZM2G099754_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os12g02810.1 (Oryza sativa), 5'ss of exon 3
AATTTGGTGAAGTTGATCGGATATTGCTGCGAAGATGACCATCGGCTGCTTGTCTACGAGTTCATGTTTCGAGGAAGTCTAGAAAACCACTTATTCCGAAgtaaaccttctgctcctgttatgctgtttgtcagagtgtgaatgacatcatcaccgagttcagtgctgccacttttttacttaatgtcttctgttttccc-----
||||| || |||||||| || ||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||   | |  ||||| ||   |  ||  | |   | | | || |   ||       ||| ||| |  |||||||| | |  || | ||    | |        
AATTTAGTCAAGTTGATTGGGTATTGCTGCGAAGATGACCACAGGCTGCTTGTGTACGAGTTCATGTTTCGAGGAAGTCTAGAAAACCACTTATTCCGAAgtaagaatccaactccttttcatcacttcatgatgatatca-tggcggaatagt----ttctgtgatcacactttttaaatatatatttttctctctataataca

upper sequence: GRMZM2G099754_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA18G45200.1 (Glycine max), 5'ss of exon 3
-AATTTGGTGAAGTTGATCGGATATTGCTGCGAAGATGACCATCGGCTGCTTGTCTACGAGTTCATGTTTCGAGGAAGTCTAGAAAACCACTTATTCCGAAgtaaacc---ttctgctcctgttatgctgtttgtcagagt--gtgaatgacatcatcaccgagttcagtgctgccacttttttac-ttaatgtcttctgttttccc
 ||| ||||||||||||| || || |||||||||||||| ||  |||||||||| || ||||||||||||||||| ||| | ||||| ||||| ||||||||||   |   || ||| | |  ||  |      |||   |  ||   |    |  |  |   ||| ||   ||  |    |||   |  | ||  |  |       
TAATCTGGTGAAGTTGATTGGGTACTGCTGCGAAGATGATCACAGGCTGCTTGTGTATGAGTTCATGTTTCGAGGGAGTTTGGAAAATCACTTGTTCCGAagtacggcgagttttgccctttctaaacaaaaattcaatttcggttggttttgttcttgctttgtttaggaatggaatggatttggatctaagtgatgag-------

upper sequence: GRMZM2G099754_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA09G40650.1 (Glycine max), 5'ss of exon 3
AATTTGGTGAAGTTGATCGGATATTGCTGCGAAGATGACCATCGGCTGCTTGTCTACGAGTTCATGTTTCGAGGAAGTCTAGAAAACCACTTATTCCGAAgtaaacc---ttctgctcctgttatgctgtttgtcag--agtgtgaatgacatcatcaccgagttcagtgctgccacttttttacttaatgtcttctgttttccc
||| ||||||||||||| || || || || |||||||| ||  |||||||||| || ||||||||||| ||||| ||| | ||||| ||||||||||||||||   |   || ||||| | | |  |   || |  |   || ||||||    | | |    |    |   |   |  |        |  |  |  |        
AATCTGGTGAAGTTGATTGGGTACTGTTGTGAAGATGATCACAGGCTGCTTGTGTATGAGTTCATGTTCCGAGGGAGTTTGGAAAATCACTTATTCCGAAgtacggcgagttttgctcttttgaaacaaattttttgttggtttgaatgtttgctttaggatggaatgaatttggatctgagggaagagaggttcttaaa-----

upper sequence: GRMZM2G099754_T01 (Zea mays), 5'ss of exon 3
lower sequence: Vv08s0056g00150.t01 (Vitis vinifera), 5'ss of exon 3
AATTTGGTGAAGTTGATCGGATATTGCTGCGAAGATGACCATCGGCTGCTTGTCTACGAGTTCATGTTTCGAGGAAGTCTAGAAAACCACTTATTCCGAAgtaaaccttctgctcct-gttatgctgtttgtcagagtgtgaatgacatcatcaccgagttcagtgctgccacttttttacttaatgtcttctgttttccc
||| ||||||||||||| || ||||| ||||| || || || ||| ||||||| |||||||| ||||| |||||||| || ||||| ||||| || |||||||  |    | ||  | | | |||    ||        |  | | | |  |  |  ||  |    |         ||   |   | |    ||  | |  
AATCTGGTGAAGTTGATAGGGTATTGTTGCGAGGACGATCACCGGTTGCTTGTGTACGAGTTTATGTTCCGAGGAAGCCTCGAAAATCACTTGTTTCGAAgtacgctccgttctttttgctttgccaaatgattactaatttaagcctttttagcttagcccgaatcaagatggacttgtttctctattcattgaatgcg-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78089253|gb|DV517627.1|DV517627
EST:     TGTCTACGAGTTCATGTTTCGAGGAAGTCTAGAAAACCACTTATTCCGAA                         AGACAGCTACGCCATTGCCCTGGGGTACTAGGATGTCAATCGCGCTGGGAG
genomic: TGTCTACGAGTTCATGTTTCGAGGAAGTCTAGAAAACCACTTATTCCGAAgtaaaccttc ... atgttctcagAGACAGCTACGCCATTGCCCTGGGGTACTAGGATGTCAATCGCGCTGGGAG
EST: gi|32833257|gb|CD972935.1|CD972935
EST:     TGTCTACGAGTTCATGTTTCGAGGAAGTCTAGAAAACCACTTATTCCGAA                         AGACAGCTACGCCATTGCCCTGGGGT
genomic: TGTCTACGAGTTCATGTTTCGAGGAAGTCTAGAAAACCACTTATTCCGAAgtaaaccttc ... atgttctcagAGACAGCTACGCCATTGCCCTGGGGT
EST: gi|6564164|gb|AW231786.1|AW231786
EST:     TGTCTACGAGTTCATGTTTCGAGGAAGTCTAGAAAACCACTTATTCCGAA                         AGACAGCTACGCCATTGCCCTGGGGTACTAGGATGTCAATCGCGCTGGGAG
genomic: TGTCTACGAGTTCATGTTTCGAGGAAGTCTAGAAAACCACTTATTCCGAAgtaaaccttc ... atgttctcagAGACAGCTACGCCATTGCCCTGGGGTACTAGGATGTCAATCGCGCTGGGAG
EST: gi|67032695|gb|CO461444.1|CO461444
EST:     TGTCTACGAGTTCATGTTTCGAGGAAGTCTAGAAAACCACTTATTCCGAA                         AGACAGCTACGCCATTGCCCTGGGGTACTAGGATGTCAATCGCGCTGGGAG
genomic: TGTCTACGAGTTCATGTTTCGAGGAAGTCTAGAAAACCACTTATTCCGAAgtaaaccttc ... atgttctcagAGACAGCTACGCCATTGCCCTGGGGTACTAGGATGTCAATCGCGCTGGGAG
EST: gi|6637068|gb|AW261340.1|AW261340
EST:     TGTCTACGAGTTCATGTTTCGAGGAAGTCTAGAAAACCACTTATTCCGAA                         AGACAGCTACGCCATTGCCCTGGGGTACTAGGATGTCAATCGCGCTGGGAG
genomic: TGTCTACGAGTTCATGTTTCGAGGAAGTCTAGAAAACCACTTATTCCGAAgtaaaccttc ... atgttctcagAGACAGCTACGCCATTGCCCTGGGGTACTAGGATGTCAATCGCGCTGGGAG
EST: gi|148962074|gb|EE012878.2|EE012878
EST:     TGTCTACGAGTTCATGTTTCGAGGAAGTCTAGAAAACCACTTATTCCGAA                         AGACAGCTACGCCATTGCCCTGNGGTACTAGGATGTCAATCGCGCTGGGAG
genomic: TGTCTACGAGTTCATGTTTCGAGGAAGTCTAGAAAACCACTTATTCCGAAgtaaaccttc ... atgttctcagAGACAGCTACGCCATTGCCCTGGGGTACTAGGATGTCAATCGCGCTGGGAG