Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCATCAAGCTCATCGGCGCCAAGAAGACCATGGAGATCGGCGTCTACACCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccctttctctctttctctctctctctctttcccagatctgccacccacccagaccaaggatctttacccctctctgtctctctctctgttgctcgtccccccgcag

Basic information

species Zea mays
transcript GRMZM2G099363_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G099363_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os06g06980.3 (Oryza sativa), 5'ss of exon 2
GCTCATCAAGCTCATCGGCGCCAAGAAGACCATGGAGATCGGCGTCTACACCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccctttctctctttctctctctctctctttcccagatctgccaccca---cccagaccaaggatctttacccctct-ctgtctctctctctgttgctcgtccccccgcag
|||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||  |||| || |||||||||||| |   |    | |   | | |  ||||| ||  || |||||||| ||   |   ||||  | |  ||  |  | |||||| ||  ||    |                      
GCTGCTGAAGCTCATCGGCGCCAAGAAGACCATGGAGATCGGCGTCTACACCGGCTACTCCCTCCTCGCCACCGCCCTCGCCATCCCCGACGACGGCACGgtcagcaaca---cgcaaatcccccatctct-tccatcgcagatctggcaagaaatccccaatcgattgacgtccatccctctgctaactaatgcag--------------------

upper sequence: GRMZM2G099363_T03 (Zea mays), 5'ss of exon 2
lower sequence: AT4G34050.1 (Arabidopsis thaliana), 5'ss of exon 2
GCTCATCAAGCTCATCGGCGCCAAGAAGACCATGGAGATCGGCGTCTACACCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccctttctctctttctctctctctctctttcccagatctgccacccacccagaccaaggatctttacccctctctgtctctctctctgttgctcgtccccccgcag
||| ||||||||| |   ||||||||| || ||||||||||| || ||||| |||||||| || ||||||||||| || || ||||| || |||||||  ||   |   |  |||||   ||   |||| | | ||     | | || |   |      |   |   | || | || | |     ||                          
GCTTATCAAGCTCGTTAACGCCAAGAACACAATGGAGATCGGAGTTTACACTGGCTACTCTCTTCTCGCCACCGCTCTTGCTCTCCCTGAAGACGGCAAAgtaaat---caatctcttcatcctcctctgttttttggtgggttttgtcgaacttgggaattgaaagt-ttcatcctttttatcatcag------------------------

upper sequence: GRMZM2G099363_T03 (Zea mays), 5'ss of exon 2
lower sequence: Vv03s0063g00140.t01 (Vitis vinifera), 5'ss of exon 3
GCTCATCAAGCTCATCGGCGCCAAGAAGACCATGGAGATCGGCGTCTACACCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccctttctctctttctctctctctctcttt---cccagatctgccacccacccagaccaaggatctttacccctctctgtctctctctctgttgctcgtccccccgcag
|||  |||||||||||   |||||||| ||||||||||| ||||||||||| |||||||| || || ||||| || || || ||||| || ||||| | ||||||       ||     |   | |  |     |     | |  ||     |        |   ||  |  ||    | |   |||  |                          
GCTTCTCAAGCTCATCAATGCCAAGAACACCATGGAGATAGGCGTCTACACTGGCTACTCTCTTCTGGCCACAGCCCTTGCTCTCCCCGATGACGGAAAGgtcgggaaatggtcatagatcaacacagtaatcatccaagcacgtataaaaaaatgttatggctgaaaaaaattggttcttgattgttgcag------------------------

upper sequence: GRMZM2G099363_T03 (Zea mays), 5'ss of exon 2
lower sequence: Vv07s0031g00350.t01 (Vitis vinifera), 5'ss of exon 3
GCTCATCAAGCTCATCGGCGCCAAGAAGACCATGGAGATCGGCGTCTACACCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccctttctctctttctctctctctctctttcccagatctgccacccacccagaccaaggatctttacccctctctgtctctctctctgttgctcgtccccccgcag
|||  |||| ||||||  ||||||||| |||||||| |||||||| |||||||||||||| |||||||||||||| ||||| || || || ||||| | |||  |      |  || |     |       |    ||  |||     ||| |     |       |      |       ||          | |||  | |          
GCTGCTCAAACTCATCAACGCCAAGAACACCATGGAAATCGGCGTTTACACCGGCTACTCCCTCCTCGCCACCGCCCTCGCTCTTCCCGACGACGGAAAGgtaagaaaaaatcatcacc----catcaagacaaaatcaaagaaaaaacactctgtttggtttcatagaaaaccaaggaaatgcagagaaaaattttgaccatt---------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149101272|gb|EE187384.2|EE187384
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|148972013|gb|EE022838.2|EE022838
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGACCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|78123950|gb|DV542334.1|DV542334
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|18963317|gb|BM660366.1|BM660366
EST:     GCTACTACAGCTCCTCAGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: GCTACT-C-GCTCCTC-GCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|50336771|gb|CO531897.1|CO531897
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|91051409|gb|EB161827.1|EB161827
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|71443172|gb|DR824222.1|DR824222
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|67031902|gb|CO460651.1|CO460651
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|91876481|gb|EB406438.1|EB406438
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|120479778|gb|EH210632.1|EH210632
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|211456349|gb|FL164074.1|FL164074
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|91876447|gb|EB406404.1|EB406404
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|211456348|gb|FL164073.1|FL164073
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|71765961|gb|DR963898.1|DR963898
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|67019504|gb|CO448253.1|CO448253
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|148998166|gb|EE035959.2|EE035959
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|5510830|gb|AI857214.1|AI857214
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|74238429|gb|DT646343.1|DT646343
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|148985087|gb|EE029621.2|EE029621
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|78082021|gb|DV510433.1|DV510433
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGACCTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|78123859|gb|DV542243.1|DV542243
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|67017580|gb|CO446329.1|CO446329
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|76915702|gb|DV166083.1|DV166083
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|149015442|gb|EE045300.2|EE045300
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|148999943|gb|EE037004.2|EE037004
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|149014739|gb|EE044420.2|EE044420
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|149070197|gb|EE158600.2|EE158600
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|71761423|gb|DR959360.1|DR959360
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|211456350|gb|FL164075.1|FL164075
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|71445182|gb|DR826232.1|DR826232
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|149077072|gb|EE165728.2|EE165728
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|86474833|gb|DY241203.1|DY241203
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|16916553|gb|BM072891.1|BM072891
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|74238430|gb|DT646344.1|DT646344
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|78091016|gb|DV519390.1|DV519390
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|93012213|gb|EB637733.1|EB637733
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|211456343|gb|FL164068.1|FL164068
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACCATCA-CCGCGAGAACTACGAGCTAGGCCTTCCCTG
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGAC-ATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTG
EST: gi|93012147|gb|EB637667.1|EB637667
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|76012700|gb|DT939870.1|DT939870
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|91874063|gb|EB404020.1|EB404020
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|50337682|gb|CO532808.1|CO532808
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|71438266|gb|DR819316.1|DR819316
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|94479696|gb|EB708654.1|EB708654
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCT
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCC-ATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCT
EST: gi|78121952|gb|DV540336.1|DV540336
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGGCATGGACATCAAC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAAC
EST: gi|50334621|gb|CO529747.1|CO529747
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|148935114|gb|EC879154.2|EC879154
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|33466804|gb|CF243853.1|CF243853
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|91879069|gb|EB409026.1|EB409026
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|50337681|gb|CO532807.1|CO532807
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|89759581|gb|DY688363.1|DY688363
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|149050399|gb|EE155646.2|EE155646
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|37379818|gb|CF626673.1|CF626673
EST:     CCGGATACTCGTTCCTGGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|78089028|gb|DV517421.1|DV517421
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|211456344|gb|FL164069.1|FL164069
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|211456345|gb|FL164070.1|FL164070
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAAGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGGCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|149014740|gb|EE044421.2|EE044421
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|50338479|gb|CO533605.1|CO533605
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|50328057|gb|CO523183.1|CO523183
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|86474834|gb|DY241204.1|DY241204
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|18963587|gb|BM660518.1|BM660518
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|14244780|gb|BG842718.2|BG842718
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|211456347|gb|FL164072.1|FL164072
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|19351241|gb|BM895773.1|BM895773
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|211091281|gb|FL220529.1|FL220529
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
EST: gi|71446731|gb|DR827781.1|DR827781
EST:     CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACG                         ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC
genomic: CCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccc ... ccccccgcagATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTAGGCCTTCCCTGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTCATCAAGCTCATCGGCGCCAAGAAGACCATGGAGATCGGCGTCTACACCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccctttctctctttctctctctctctctttcccagatctgccacccacccagaccaaggatctttacccctctctgtctctctctctgttgctcgtccccccgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGCCACCG