1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTTCCGGGGCGATAGCTCTCAAGGACTACTCCGAGGCTGGGTTCATCGTGTTCCTGTTCACTACGGCCGAATGGCTGGAGACCAGGGCGAGCCACAAGgtaggtagacacctgcttccgtctcttttttcagcagttttgttcttgcattgcatttgcatacacaacaagtaatgatagtggtgagacctcttagttctaaatgactgtttggcacgcacgtcacgtacgtatgtag
species | Zea mays |
transcript | GRMZM2G099191_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGTTCCTGTTCACTACGGCCGAATGGCTGGAGACCAGGGCGAGCCACAAG GCGACTGCTGGGATGTCGTCGCTGATGAGCATGGCGCCACAGAAGGCTGTCEST: gi|149004834|gb|EE039339.2|EE039339
genomic: TGTTCCTGTTCACTACGGCCGAATGGCTGGAGACCAGGGCGAGCCACAAGgtaggtagac ... acgtatgtagGCGACTGCTGGGATGTCGTCGCTGATGAGCATGGCGCCACAGAAGGCTGTC
EST: TGTTCCTGTTCACTACGGCCGAATGGCTGGAGACCAGGGCGAGCCACAAG GCGACTGCTGGGATGTCGTCGCTGATGAGCATGGCGCCACAGAAGGCTGTCEST: gi|149070628|gb|EE159039.2|EE159039
genomic: TGTTCCTGTTCACTACGGCCGAATGGCTGGAGACCAGGGCGAGCCACAAGgtaggtagac ... acgtatgtagGCGACTGCTGGGATGTCGTCGCTGATGAGCATGGCGCCACAGAAGGCTGTC
EST: TGTTCCTGTTCACTACGGCCGAATGGCTGGAGACCAGGGCGAGCCACAAG GCGACTGCTGGGATGTCGTCGCTGATGAGCATGGCGCCACAGAAGGCTGTCEST: gi|24765848|gb|CA401007.1|CA401007
genomic: TGTTCCTGTTCACTACGGCCGAATGGCTGGAGACCAGGGCGAGCCACAAGgtaggtagac ... acgtatgtagGCGACTGCTGGGATGTCGTCGCTGATGAGCATGGCGCCACAGAAGGCTGTC
EST: AGTTCCTGTTCACTACGGCCGAATGGCTGGAGACCATGGCGAGCCACAAG GCGACTGCTGGGATGTCGTCGCTGATGAGCATGGCGCCACAGAAGGCTGTCEST: gi|148934257|gb|EC878279.2|EC878279
genomic: TGTTCCTGTTCACTACGGCCGAATGGCTGGAGACCAGGGCGAGCCACAAGgtaggtagac ... acgtatgtagGCGACTGCTGGGATGTCGTCGCTGATGAGCATGGCGCCACAGAAGGCTGTC
EST: TGTTCCTGTTCACTACGGCCGAATGGCTGGAGACCAGGGCGAGCCACAAG GCGACTGCTGGGATGTCGTCGCTGATGAGCATGGCGCCACAGAAGGCTGTCEST: gi|149079488|gb|EE168465.2|EE168465
genomic: TGTTCCTGTTCACTACGGCCGAATGGCTGGAGACCAGGGCGAGCCACAAGgtaggtagac ... acgtatgtagGCGACTGCTGGGATGTCGTCGCTGATGAGCATGGCGCCACAGAAGGCTGTC
EST: TGTTCCTGTTCACTACGGCCGAATGGCTGGAGACCAGGGCGAGCCACAAG GCGACTGCTGGGATGTCGTCGCTGATGAGCATGGCGCCACAGAAGGCTGTCEST: gi|149103749|gb|EE289155.2|EE289155
genomic: TGTTCCTGTTCACTACGGCCGAATGGCTGGAGACCAGGGCGAGCCACAAGgtaggtagac ... acgtatgtagGCGACTGCTGGGATGTCGTCGCTGATGAGCATGGCGCCACAGAAGGCTGTC
EST: TGTTCCTGTTCACTACGGCCGAATGGCTGGAGACCAGGGCGAGCCACAAG GCGACTGCTGGGATGTCGTCGCTGATGAGCATGGCGCCACAGAAGGCTGTC
genomic: TGTTCCTGTTCACTACGGCCGAATGGCTGGAGACCAGGGCGAGCCACAAGgtaggtagac ... acgtatgtagGCGACTGCTGGGATGTCGTCGCTGATGAGCATGGCGCCACAGAAGGCTGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTCCGGGGCGATAGCTCTCAAGGACTACTCCGAGGCTGGGTTCATCGTGTTCCTGTTCACTACGGCCGAATGGCTGGAGACCAGGGCGAGCCACAAGgtaggtagacacctgcttccgtctcttttttcagcagttttgttcttgcattgcatttgcatacacaacaagtaatgatagtggtgagacctcttagttctaaatgactgtttggcacgcacgtcacgtacgtatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA