1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CGGATGGACCTGCCATCAAACACACGATTTATATTGTAACAGAGCCTGTTATGCCACTTTCTGAAAAGCTCAAGGAACTGAATCTTGGTGGTACACAGAGgtatcgtgagcttcttgtagctttgtgtttatcaaaatgttcttttcacaaagaaaaaaaatctgcagtttctagcattttttcagtaggttttaattcagttctgttaatgtttccttttttggacattgaactactttgtcgttatgattaatggtgcag
species | Zea mays |
transcript | GRMZM2G098078_T04 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATGCCACTTTCTGAAAAGCTCAAGGAACTGAATCTTGGTGGTACACAGAG AGATGAGTACTTTGCATGEST: gi|211424858|gb|FL220406.1|FL220406
genomic: ATGCCACTTTCTGAAAAGCTCAAGGAACTGAATCTTGGTGGTACACAGAGgtatcgtgag ... aatggtgcagAGATGAGTACTTTGCATG
EST: ATGCCACTTTCTGAAAAGCTCAAGGAACTGAATCTTGGTGGTACACAGAG AGATGAGTACTTTGCATGGGGGCTTCATCAGATATCCAAAGCTGTGAGCTTEST: gi|76289771|gb|DV029339.1|DV029339
genomic: ATGCCACTTTCTGAAAAGCTCAAGGAACTGAATCTTGGTGGTACACAGAGgtatcgtgag ... aatggtgcagAGATGAGTACTTTGCATGGGGGCTTCATCAGATATCCAAAGCTGTGAGCTT
EST: ATGCCACTTTCTGAAAAGCTCAAGGAACTGAATCTTGGTGGTACACAGAG AGATGAGTACTTTGCATGGGGGCTTCATCAGATATCCAAAGCTGTGAGCTTEST: gi|211352110|gb|FL449964.1|FL449964
genomic: ATGCCACTTTCTGAAAAGCTCAAGGAACTGAATCTTGGTGGTACACAGAGgtatcgtgag ... aatggtgcagAGATGAGTACTTTGCATGGGGGCTTCATCAGATATCCAAAGCTGTGAGCTT
EST: ATGCCACTTTCTGAAAAGCTCAAGGAACTGAATCTTGGTGGTACACAGAG AGATGAGTACTTTGCATGGGGGCTTCATCAGATATCCAAAGCTGTGAGCTT
genomic: ATGCCACTTTCTGAAAAGCTCAAGGAACTGAATCTTGGTGGTACACAGAGgtatcgtgag ... aatggtgcagAGATGAGTACTTTGCATGGGGGCTTCATCAGATATCCAAAGCTGTGAGCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGATGGACCTGCCATCAAACACACGATTTATATTGTAACAGAGCCTGTTATGCCACTTTCTGAAAAGCTCAAGGAACTGAATCTTGGTGGTACACAGAGgtatcgtgagcttcttgtagctttgtgtttatcaaaatgttcttttcacaaagaaaaaaaatctgcagtttctagcattttttcagtaggttttaattcagttctgttaatgtttccttttttggacattgaactactttgtcgttatgattaatggtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG