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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATTCCACTGGAGAAGGTTCAAGTTAAATCCTCAGGACATGTTATGCCATATGTTGGTGTTGCTTGTTTGGGGGCTATTCTGTTTGGTTATCATCTTGGgtatgtactttatcactactacaagatgattgtttcttaaacacaattggataaagcataatttactgcattttaattgatgaaaatgaataacaagctgaaaataaaatagttccatcttttctgcacttatcttgtgaacacaaaaactgttagataataccaggaatccatttcatggaatgtag

Basic information

species Zea mays
transcript GRMZM2G098011_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G098011_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g04190.2 (Oryza sativa), 5'ss of exon 3
ATATTCCACTGGAGAAGGTTCAAGTTAAATCCTCAGGACATGTTATGCCATATGTTGGTGTTGCTTGTTTGGGGGCTATTCTGTTTGGTTATCATCTTGGgtatgtactttatcactactacaag---atgattgtttcttaaacacaattggataaagcata-atttactgca-ttttaattgatgaaaatgaataacaagctgaaaataaaatagttccatcttttctgcacttatcttgtgaacacaaaaactgttagataataccaggaatccatttcatggaatgtag
|||||||| ||||||||||||||| |||||| || |||  |||| |||||||||| || ||||||||||||||||||||| | |||||||||||||||||||||||| | | |  ||  | | |     | ||  || | || |     |   |  |  || | |||   || |   | |||| |     |||||||||||         ||  |   |   || ||| || | || | || || |                                               
ATATTCCATTGGAGAAGGTTCAAGCTAAATCTTCTGGAAGTGTTCTGCCATATGTGGGCGTTGCTTGTTTGGGGGCTATTTTATTTGGTTATCATCTTGGgtatgtattgtgttgctgtttccaatttgtcataattgcatagattttctgtcaccacccacacattccttgtaacctgaatttaaattgatgaataacaatacctggtaaatctgaatatctcattt-tgaatttgtgttctgcag----------------------------------------------

upper sequence: GRMZM2G098011_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA13G07780.1 (Glycine max), 5'ss of exon 3
ATATTCCACTGGAGAAGGTTCAAGTTAAATCCTCAGGACATGTTATGCCATATGTTGGTGTTGCTTGTTTGGGGGCTATTCTGTTTGGTTATCATCTTGGgtatgtactttatcactactacaagatgattgtttcttaaacacaattggataaagcataattt----actgcattttaattgatgaaaatgaataacaagctgaaaataaaatagttccatcttttctgcacttatcttgtgaacacaaaaactgttagataataccaggaatccatttcatggaatgtag
|| ||   |  |  |    ||| |  ||||| || ||| ||||| | ||||||||||||||||||||  | || || ||| | |||||||||||||| ||||||| |     ||   |    |  |||   ||   |  |  | |||     |   |||  | |     ||||  | ||| | || |||||||   |  ||                                                                                           
ATGTTGTTCCAGCTACTCCTCAGGGCAAATCTTCTGGAAATGTTCTACCATATGTTGGTGTTGCTTGCCTCGGAGCCATTTTATTTGGTTATCATCTCGGgtatggatagcctcttcatattagtatgtgggtcaatggacaataatgcagcatgtcattttctttgtgctgccatctaagttataaaaatga--tatgagt------------------------------------------------------------------------------------------

upper sequence: GRMZM2G098011_T02 (Zea mays), 5'ss of exon 3
lower sequence: AT5G16150.1 (Arabidopsis thaliana), 5'ss of exon 3
ATATTCCACTGGAGAAGGTTCAAGTTAAATCCTCAGGACATGTTATGCCATATGTTGGTGTTGCTTGTTTGGGGGCTATTCTGTTTGGTTATCATCTTGGgtatgtactttatcactactacaagatgattgtttcttaaacacaattggataaagcataatttactgcattttaattgatgaaaatgaataacaagctgaaaataaaatagttccatcttttctgcacttatcttgtgaacacaaaaactgttagataataccaggaatccatttcatggaatgtag
|   |  ||    ||    | |||  |||  ||| |||   ||| |||| | |||||||||||||||| | || ||||| || |||||||||||||| ||||||| |||  ||    ||||||   |  || | |       |  || |||| | | ||  | || || | |  |||                                                                                                               
AAGCTATACCTCTGAGATCTGAAGGGAAAAGCTCTGGAACAGTTTTGCCTTTTGTTGGTGTTGCTTGTCTTGGTGCTATACTCTTTGGTTATCATCTCGGgtatg-actaaat----actacactgtttttatcttggtgtgatcat-ggatgatg-atgttctattggactg-aatcag------------------------------------------------------------------------------------------------------------

upper sequence: GRMZM2G098011_T02 (Zea mays), 5'ss of exon 3
lower sequence: Vv14s0006g02720.t01 (Vitis vinifera), 5'ss of exon 3
ATATTCCACTGGAGAAGGTTCAAGTTAAATCCTCAGGACATGTTATGCCATATGTTGGTGTTGCTTGTTTGGGGGCTATTCTGTTTGGTTATCATCTTGGgtatg--tactttatcactactacaagatgattgtttcttaaacacaattggataaagcataatttactgcattttaattgatgaaaatgaataacaagctgaaaataaaatagttccatcttttctgcacttatcttgtgaacacaaaaactgttagataataccaggaatccatttcatggaatgtag
|| ||    |          || |  ||||| || |||   ||| |||||| |||||||||||||||| |||| || |||||||||||||||||||| |||||||  |  ||||||      | |  ||| || ||   |      ||||    ||| | | | |||  | |||| ||||       |  | | | |  ||                                                                                         
ATGTTGATGTCACTGCTCCCCAGGGCAAATCTTCTGGAACAGTTTTGCCATTTGTTGGTGTTGCTTGTCTGGGAGCAATTCTGTTTGGTTATCATCTAGGgtatgactgatttatcttagaaatagcatgctttttctatctgttaaattctg-aaatcttcaattaaagaatttgaatttcctttcaccatttatacact-----------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211244569|gb|FL131418.1|FL131418
EST:     TATGTTGGTGTTGCTTGTTTGGGGGCTATTCTGTTTGGTTATCATCTTGG                         TGTGGTCAATGGTGCGCTTGAATATCTTGCGAAGGATCTTGGGATTGCTGA
genomic: TATGTTGGTGTTGCTTGTTTGGGGGCTATTCTGTTTGGTTATCATCTTGGgtatgtactt ... tggaatgtagTGTGGTCAATGGTGCGCTTGAATATCTTGCGAAGGATCTTGGAATTGCTGA
EST: gi|211244564|gb|FL131413.1|FL131413
EST:     TATGTTGGTGTTGCTTGTTTGGGGGCTATTCTGTTTGGTTATCATCTTGG                         TGTGGTCAATGGTGCGCTTGAATATCTTGCGAAGGATCTTGGGATTGCTGA
genomic: TATGTTGGTGTTGCTTGTTTGGGGGCTATTCTGTTTGGTTATCATCTTGGgtatgtactt ... tggaatgtagTGTGGTCAATGGTGCGCTTGAATATCTTGCGAAGGATCTTGGAATTGCTGA