1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
ATGACTGTCCGTGATGCATTGAACTCTGCATTGGATGAAGAGATGTCTGCTGATCCTTCCGTTTTTCTGATGGGAGAAGAGgtattgcctggaaaaaaactttctgctggtctcttttctcctgttcagtgtctggtgtataatccatattcctactcatttgtgtag
species | Zea mays |
transcript | GRMZM2G097226_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGGATGAAGAGATGTCTGCTGATCCTTCCGTTTTTCTGATGGGAGAAGAG GTTGGAGAGTACCAAGGTGCATACAAGEST: gi|211069303|gb|FL193602.1|FL193602
genomic: TGGATGAAGAGATGTCTGCTGATCCTTCCGTTTTTCTGATGGGAGAAGAGgtattgcctg ... atttgtgtagGTTGGAGAGTACCAAGGTGCATACAAG
EST: TGGATGAAGAGATGTCTGCTGATCCTTCCGTTTTTCTGATGGGAGAAGAG GTTGGAGAGTACCAAGGTGCATACAAGEST: gi|32799904|gb|CD952140.1|CD952140
genomic: TGGATGAAGAGATGTCTGCTGATCCTTCCGTTTTTCTGATGGGAGAAGAGgtattgcctg ... atttgtgtagGTTGGAGAGTACCAAGGTGCATACAAG
EST: TGGATGAAGAGATGTCTGCTGATCCTTCCGTTTTTCTGATGGGAGAAGAG GTTGGAGAGTACCAAGGCGCATACAAGEST: gi|91057168|gb|EB167586.1|EB167586
genomic: TGGATGAAGAGATGTCTGCTGATCCTTCCGTTTTTCTGATGGGAGAAGAGgtattgcctg ... atttgtgtagGTTGGAGAGTACCAAGGTGCATACAAG
EST: TGGATGAAGAGATGTCTGCTGATCCTTCCGTTTTTCTGATGGGAGAAGAG GTTGGAGAGTACCAAGGTGCATACAAG
genomic: TGGATGAAGAGATGTCTGCTGATCCTTCCGTTTTTCTGATGGGAGAAGAGgtattgcctg ... atttgtgtagGTTGGAGAGTACCAAGGTGCATACAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGACTGTCCGTGATGCATTGAACTCTGCATTGGATGAAGAGATGTCTGCTGATCCTTCCGTTTTTCTGATGGGAGAAGAGgtattgcctggaaaaaaactttctgctggtctcttttctcctgttcagtgtctggtgtataatccatattcctactcatttgtgtag
- - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA