1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TCATTACATTCTAATCCCGCAGCACTTTCGGAGTATGTAAAAGCTCTTGTAAGGGTTGATAGGCTGGACGAGAGTGCCTTGCTTAAAACACTGCAGAGAGgtaccaaagtcctaagacatttcctttatttcatagctgagaaaattttgcattctgttacattatatgtgcaatgcagctactgtttatttttccaatt...
species | Zea mays |
transcript | GRMZM2G096764_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AAGGGTTGATAGGCTGGACGAGAGTGCCTTGCTTAAAACACTGCAGAGAG GTGATGTTTCCTTGACAAGGGGGGAAGAAAGCTTTAGTAGCATTCCAGCTTEST: gi|211410592|gb|FL038502.1|FL038502
genomic: AAGGGTTGATAGGCTGGACGAGAGTGCCTTGCTTAAAACACTGCAGAGAGgtaccaaagt ... ttttgtacagGTGTTGTTTCCTTGACAAGGGGGGAAGAAAGCTTTAGTAGCATTCCAGCTT
EST: AAGGGTTGATAGGCTGGACGAGAGTGCCTTGCTTAAAACACTGCAGAGAG GTGTTGTTTCCTTGACAAGGGGGGAAGAAAGCTTTAGTAGCATTCCAGCTTEST: gi|91877293|gb|EB407250.1|EB407250
genomic: AAGGGTTGATAGGCTGGACGAGAGTGCCTTGCTTAAAACACTGCAGAGAGgtaccaaagt ... ttttgtacagGTGTTGTTTCCTTGACAAGGGGGGAAGAAAGCTTTAGTAGCATTCCAGCTT
EST: AAGGGTTGATAGGCTGGACGAGAGTGCCTTGCTTAAAACACTGCAGAGAG GTGTTGTTTCCTTGACAAGGGGGGAAGAAAGCTTTAGTAGCATTCCAGCTTEST: gi|211410589|gb|FL038499.1|FL038499
genomic: AAGGGTTGATAGGCTGGACGAGAGTGCCTTGCTTAAAACACTGCAGAGAGgtaccaaagt ... ttttgtacagGTGTTGTTTCCTTGACAAGGGGGGAAGAAAGCTTTAGTAGCATTCCAGCTT
EST: AAGGGTTGATAGGCTGGACGAGAGTGCCTTGCTTAAAACACTGCAGAGAG GTGTTGTTTCCTTGACAAGGGGGGAAGAAAGCTTTAGTAGCATTCCAGCTTEST: gi|211410588|gb|FL038498.1|FL038498
genomic: AAGGGTTGATAGGCTGGACGAGAGTGCCTTGCTTAAAACACTGCAGAGAGgtaccaaagt ... ttttgtacagGTGTTGTTTCCTTGACAAGGGGGGAAGAAAGCTTTAGTAGCATTCCAGCTT
EST: AAGGGTTGATAGGCTGGACGAGAGTGCCTTGCTTAAAACACTGCAGAGAG GTGTTGTTTCCTTGACAAGGGGGGAAGAAAGCTTTAGTAGCATTCCAGCTTEST: gi|211410600|gb|FL038510.1|FL038510
genomic: AAGGGTTGATAGGCTGGACGAGAGTGCCTTGCTTAAAACACTGCAGAGAGgtaccaaagt ... ttttgtacagGTGTTGTTTCCTTGACAAGGGGGGAAGAAAGCTTTAGTAGCATTCCAGCTT
EST: AAGGGTTGATAGGCTGGACGAGAGTGCCTTGCTTAAAACACTGCANAGAG GTGTTGTTTTCCTTGACAAGGGGGGAAGAAAGCTTTAGTAGCATTCCAGCTEST: gi|149080324|gb|EE169345.2|EE169345
genomic: AAGGGTTGATAGGCTGGACGAGAGTGCCTTGCTTAAAACACTGCAGAGAGgtaccaaagt ... ttttgtacagGTGTTGTTT-CCTTGACAAGGGGGGAAGAAAGCTTTAGTAGCATTCCAGCT
EST: AAGGGTTGATAGGCTGGACGAGAGTGCCTTGCTTAAAACACTGCAGAGAG GTGTTGTTTCCTTGACAAGGGGGGAAGAAAGCTTTAGTAGCATTCCAGCTTEST: gi|211410599|gb|FL038509.1|FL038509
genomic: AAGGGTTGATAGGCTGGACGAGAGTGCCTTGCTTAAAACACTGCAGAGAGgtaccaaagt ... ttttgtacagGTGTTGTTTCCTTGACAAGGGGGGAAGAAAGCTTTAGTAGCATTCCAGCTT
EST: AAGGGTTGATAGGCTGGACGAGAGTGCCTTGCTTAAAACACTGCAGAGAG GTGTTGTTTCCTTGACAAGGGGGGAAGAAAGCTTTAGTAGCATTCCAGCTTEST: gi|211410591|gb|FL038501.1|FL038501
genomic: AAGGGTTGATAGGCTGGACGAGAGTGCCTTGCTTAAAACACTGCAGAGAGgtaccaaagt ... ttttgtacagGTGTTGTTTCCTTGACAAGGGGGGAAGAAAGCTTTAGTAGCATTCCAGCTT
EST: AAGGGTTGATAGGCTGGACGAGAGTGCCTTGCTTAAAACACTGCAGAGAG GTGTTGTTTCCTTGACAAGGGGGGAAGAAAGCTTTAGTAGCATTCCAGCTTEST: gi|211410598|gb|FL038508.1|FL038508
genomic: AAGGGTTGATAGGCTGGACGAGAGTGCCTTGCTTAAAACACTGCAGAGAGgtaccaaagt ... ttttgtacagGTGTTGTTTCCTTGACAAGGGGGGAAGAAAGCTTTAGTAGCATTCCAGCTT
EST: AAGGGTTGATAGGCTGGACGAGAGTGCCTTGCTTAAAACACTGCAGAGAG GTGTTGTTTCCTTGACAAGGGGGGAAGAAAGCTTTAGTAGCATTCCAGCTTEST: gi|211410590|gb|FL038500.1|FL038500
genomic: AAGGGTTGATAGGCTGGACGAGAGTGCCTTGCTTAAAACACTGCAGAGAGgtaccaaagt ... ttttgtacagGTGTTGTTTCCTTGACAAGGGGGGAAGAAAGCTTTAGTAGCATTCCAGCTT
EST: AAGGGTTGATAGGCTGGACGAGAGTGCCTTGCTTAAAACACTGCAGAGAG GTGTTGTTTCCTTGACAAGGGGGGAAGAAAGCTTTAGTAGCATTCCAGCTTEST: gi|211410596|gb|FL038506.1|FL038506
genomic: AAGGGTTGATAGGCTGGACGAGAGTGCCTTGCTTAAAACACTGCAGAGAGgtaccaaagt ... ttttgtacagGTGTTGTTTCCTTGACAAGGGGGGAAGAAAGCTTTAGTAGCATTCCAGCTT
EST: AAGGGTTGATAGGCTGGACGAGAGTGCCTTGCTTAAAACACTGCAGAGAG GTGTTGTTTCCTTGACAAGGGGGGAAGAAAGCTTTAGTAGCATTCCAGCTTEST: gi|211410601|gb|FL038511.1|FL038511
genomic: AAGGGTTGATAGGCTGGACGAGAGTGCCTTGCTTAAAACACTGCAGAGAGgtaccaaagt ... ttttgtacagGTGTTGTTTCCTTGACAAGGGGGGAAGAAAGCTTTAGTAGCATTCCAGCTT
EST: AAGGGTTGATAGGCTGGACGAGAGTGCCTTGCTTAAAACACTGCAGAGAG GAGTTGTTTCCTTGACAAGGGGGGAAGAAAGCTTTAGTAGCATTCCAGCTTEST: gi|211410597|gb|FL038507.1|FL038507
genomic: AAGGGTTGATAGGCTGGACGAGAGTGCCTTGCTTAAAACACTGCAGAGAGgtaccaaagt ... ttttgtacagGTGTTGTTTCCTTGACAAGGGGGGAAGAAAGCTTTAGTAGCATTCCAGCTT
EST: AAGGGTTGATAGGCTGGACGAGAGTGCCTTGCTTAAAACACTGCAGAGAG GAGTTGTTTCCTTGACAAGGGGGGAAGAAAGCTTTAGTAGCATTCCAGCTTEST: gi|211410595|gb|FL038505.1|FL038505
genomic: AAGGGTTGATAGGCTGGACGAGAGTGCCTTGCTTAAAACACTGCAGAGAGgtaccaaagt ... ttttgtacagGTGTTGTTTCCTTGACAAGGGGGGAAGAAAGCTTTAGTAGCATTCCAGCTT
EST: AAGGGTTGATAGGCTGGACGAGAGTGCCTTGCTTAAAACACTGCAGAGAG GTGTTGTTTCCTTGACAAGGGGGGAAGAAAGCTTTAGTAGCATTCCAGCTT
genomic: AAGGGTTGATAGGCTGGACGAGAGTGCCTTGCTTAAAACACTGCAGAGAGgtaccaaagt ... ttttgtacagGTGTTGTTTCCTTGACAAGGGGGGAAGAAAGCTTTAGTAGCATTCCAGCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCATTACATTCTAATCCCGCAGCACTTTCGGAGTATGTAAAAGCTCTTGTAAGGGTTGATAGGCTGGACGAGAGTGCCTTGCTTAAAACACTGCAGAGAGgtaccaaagtcctaagacatttcctttatttcatagctgagaaaattttgcattctgttacattatatgtgcaatgcagctactgtttatttttccaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagaaaat