1 5' 3' | 2 5' 3' | 3 5' 3' |
ATGCAAGGAAGTTCTTGGAGTTGATGAGAGGCAAGACACTTGCGTTCGTTGGGGATTCAGTTGCTCGGAATCAGATGGAGTCCCTCCTTTGCATTCTGTGgcaagtgagatgcctcctgctacgttcagaatcttacatttgcattatagtgtaattaagataaaaccattacctgccaaatacttttatgtgactagtt...
species | Zea mays |
transcript | GRMZM2G096169_T02 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGGGATTCAGTTGCTCGGAATCAGATGGAGTCCCTCCTTTGCATTCTGTG GCAAGTAGATGTCCCACAAAACCGAGGCAACAAAAGGATGCACAAGTGGCTEST: gi|60354175|gb|DN221148.1|DN221148
genomic: GGGGATTCAGTTGCTCGGAATCAGATGGAGTCCCTCCTTTGCATTCTGTGgcaagtgaga ... ctttttacagG----TAGATGTCCCACAAAACCGAGGCAACAAAAGGATGCACAAGTGGCT
EST: GGGGATTCAGTTGCTCGGAATCAGATGGAGTCCCTCCTTTGCATTCTGTG GTAGATGTCCCACAAAACCGAGGCAACAAAAGGATGCACAAGTGGCTCTTCEST: gi|60350385|gb|DN217358.1|DN217358
genomic: GGGGATTCAGTTGCTCGGAATCAGATGGAGTCCCTCCTTTGCATTCTGTGgcaagtgaga ... ctttttacagGTAGATGTCCCACAAAACCGAGGCAACAAAAGGATGCACAAGTGGCTCTTC
EST: GGGGATTCAGTTGCTCGGAATCAGATGGAGTCCCTCCTTTGCATTCTGTG GTAGATGTCCCACAAAACCGAGGCAACAAAAGGATGCACAAGTGGCTCTTCEST: gi|60354170|gb|DN221143.1|DN221143
genomic: GGGGATTCAGTTGCTCGGAATCAGATGGAGTCCCTCCTTTGCATTCTGTGgcaagtgaga ... ctttttacagGTAGATGTCCCACAAAACCGAGGCAACAAAAGGATGCACAAGTGGCTCTTC
EST: GGGGATTCAGTTGCTCGGAATCAGATGGAGTCCCTCCTTTGCATTCTGTG GTAGATGTCCCACAAAACCGAGGCAACAAAAGGATGCACAAGTGGCTCTTC
genomic: GGGGATTCAGTTGCTCGGAATCAGATGGAGTCCCTCCTTTGCATTCTGTGgcaagtgaga ... ctttttacagGTAGATGTCCCACAAAACCGAGGCAACAAAAGGATGCACAAGTGGCTCTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGCAAGGAAGTTCTTGGAGTTGATGAGAGGCAAGACACTTGCGTTCGTTGGGGATTCAGTTGCTCGGAATCAGATGGAGTCCCTCCTTTGCATTCTGTGgcaagtgagatgcctcctgctacgttcagaatcttacatttgcattatagtgtaattaagataaaaccattacctgccaaatacttttatgtgactagtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctcctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagataaa