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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACATCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATTgtaagtgtgcccccgccggtgtcgtctcttttctcgctgcctcctaacgcgcctcggtttcctggtaaattcttcccacccttgttttgctggggcggcag

Basic information

species Zea mays
transcript GRMZM2G095969_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G095969_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os07g06440.1 (Oryza sativa), 5'ss of exon 3
TGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACATCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATTgtaag-tgtgcccccgccgg----------tgtcgtctcttttctcgct-gcctcctaac-----gcgcctcggtttcctggt----aaattcttcccacccttgttttgctg-gggcggcag
||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||| ||||| ||||||||||| || |||||||| |||||||| ||| | ||     | |||||          | ||| ||  ||||| ||| |  | |||         | ||||| ||    ||    ||  |||| |   | ||| |||| |  |||||| ||
TGGCATGTTCAGGGGCATCTACCACGGCAAGCAATGCCACGCCGCCGACATCCCCGCCGTGCTCGCCCGCGCGTGGGCGGCCGGCGTCGACCGCATCATCgtacgctgctttgctgccggccattccccctttcgccttctttcttgcttggtttctactttcttatggctcggctttggtgtgcttaatctcttgctttctttggtttggtccgggcggaag

upper sequence: GRMZM2G095969_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os08g06880.1 (Oryza sativa), 5'ss of exon 2
TGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACATCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATTgtaag-tgtgcccccgccgg----------tgtcgtctcttttctcgctgcctcctaacgcgcctcggttt---cctggt------aaattcttcccacccttgttttgctg-gggcggcag
            |||||||||||||||||||||||||||||||||||||||||| |||||  |||| ||||||||||| || |||||||| |||||||| ||| | ||     | |||||          | |||  |||||  |   |   | |||       | || |      ||||      ||  |||| |   | ||| |||| |  |||||| ||
------------GGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACATCCCCGCCGTGATCGCCCGCGCGTGGGCGGCCGGCGTCGACCGCATCATCgtacgctgctttgctgccggccattccccctttcgcttctttcttgctttgtttctactttcttttggctcagctttggtgtgcttaatctcttgctttctttggtttggtccgggcggaag

upper sequence: GRMZM2G095969_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA19G38780.1 (Glycine max), 5'ss of exon 3
TGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACATCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATTgtaagtgtgcccccgccg-gtgtcgtctcttttctcgctgcctcctaacgc--gcctcggtttcctggtaaattcttcccacccttgttttgctggggcggcag
||||||||| ||||| ||||||||||||||||| || |||| | | || ||  |  | ||  |     | || |||||||| ||||||   || || ||||||| |||||||| |||  || ||    |    ||  |       ||| ||     |   ||| ||  | | |  |       |||   |   |          
TGGCATGTTTAAGGGAATCTACCACGGCAAGCAATGTCACGTCTCGGATATTGCAACTGTTTTGAACAGAGCTTGGGCTGCCGGCGTCACCCGAATTATTgtaa-tgtgcccctgccctgtttctcaaccaacctttcaaatctgtaatgccaagttttattttcttatgagtgatagttctgctttaatcattaattaaa---

upper sequence: GRMZM2G095969_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv08s0032g01170.t01 (Vitis vinifera), 5'ss of exon 3
TGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACATCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATTgtaa-gtgtgcccccgccggtgtcgtctcttttctcgctgcctcctaacgcgcctcggtttcctggtaa---attcttcccacccttgttttgctggggcggcag
|  |||||||||||| |||||| | ||||||||||||||||   | ||  |  | || ||  |     | || |||  ||| || || ||| | || ||||||| || | ||        | |  |   |||| |   ||| |  |   ||        |   ||  ||   | || |  | |  ||   ||  | |||      
TAACATGTTCAAGGGAATCTACAATGGCAAGCAGTGCCACGTGTCTGATCTTGCAGCAGTGTTGAGCAGAGCTTGGAGTGCTGGTGTTGATAGAATTATTgtaaagtcttccgttttttctctgtttgattttgtgaatgcttttttttgctggaaaaatgtgtgaaaagagaatcgtttcgctttttaattatttggga-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211487334|gb|FL145767.1|FL145767
EST:     TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGACCGCATCATT                         GTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
genomic: TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATTgtaagtgtgc ... ggggcggcagGTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
EST: gi|101392457|gb|EB818158.1|EB818158
EST:     TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATT                         GTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
genomic: TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATTgtaagtgtgc ... ggggcggcagGTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
EST: gi|88757501|gb|DY541642.1|DY541642
EST:     TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATT                         GTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
genomic: TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATTgtaagtgtgc ... ggggcggcagGTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
EST: gi|76936926|gb|DV174965.1|DV174965
EST:     TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATT                         GTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
genomic: TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATTgtaagtgtgc ... ggggcggcagGTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
EST: gi|211481566|gb|FL145739.1|FL145739
EST:     TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGACCGCATCATT                         GTCACCGGAG-CTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
genomic: TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATTgtaagtgtgc ... ggggcggcagGTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
EST: gi|211481567|gb|FL145740.1|FL145740
EST:     TCCCGGCCGTACTTGCGCGCGCGTGGGCTGCAGGCGTCSACCGCATCATT                         GTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
genomic: TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATTgtaagtgtgc ... ggggcggcagGTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
EST: gi|211484447|gb|FL145748.1|FL145748
EST:     TCCCGGCCGTACTTGCGCGCGCGTGGGCTGCAGGCGTCGACCGCATCATT                         GTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
genomic: TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATTgtaagtgtgc ... ggggcggcagGTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
EST: gi|211487326|gb|FL145759.1|FL145759
EST:     TCCCGGCCGTACTTGCGCGCGCGTGGGCTGCAGGCGTCGACCGCATCATT                         GTCACCGGA-GCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
genomic: TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATTgtaagtgtgc ... ggggcggcagGTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
EST: gi|211487336|gb|FL145769.1|FL145769
EST:     TCCCGGCCGTACTTGCGCGCGCGTGGGCTGCAGGCGTCGACCGCATCATT                         GTCACCGGA-GCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
genomic: TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATTgtaagtgtgc ... ggggcggcagGTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
EST: gi|211487327|gb|FL145760.1|FL145760
EST:     TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGACCGCATCATT                         GTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
genomic: TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATTgtaagtgtgc ... ggggcggcagGTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
EST: gi|94477631|gb|EB706589.1|EB706589
EST:     TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATT                         GTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
genomic: TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATTgtaagtgtgc ... ggggcggcagGTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
EST: gi|211484455|gb|FL145756.1|FL145756
EST:     TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGACCGCATCATT                         GTCACCGGAG-CTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
genomic: TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATTgtaagtgtgc ... ggggcggcagGTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
EST: gi|211484456|gb|FL145757.1|FL145757
EST:     TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGACCGCATCATT                         GTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
genomic: TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATTgtaagtgtgc ... ggggcggcagGTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
EST: gi|211487328|gb|FL145761.1|FL145761
EST:     TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGACCGCATCATT                         GTCACCGGAG-CTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
genomic: TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATTgtaagtgtgc ... ggggcggcagGTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
EST: gi|71774366|gb|DR972244.1|DR972244
EST:     TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATT                         GTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
genomic: TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATTgtaagtgtgc ... ggggcggcagGTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
EST: gi|76021692|gb|DT948862.1|DT948862
EST:     TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATT                         GTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
genomic: TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATTgtaagtgtgc ... ggggcggcagGTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
EST: gi|74242558|gb|DT650472.1|DT650472
EST:     TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATT                         GTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
genomic: TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATTgtaagtgtgc ... ggggcggcagGTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
EST: gi|211481564|gb|FL145737.1|FL145737
EST:     TCCCGGCCGTACTTGCGCGCGCGTGGGCTGCAGGCGTCGACCGCATCATT                         GTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
genomic: TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATTgtaagtgtgc ... ggggcggcagGTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
EST: gi|71434563|gb|DR815613.1|DR815613
EST:     TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATT                         GTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
genomic: TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATTgtaagtgtgc ... ggggcggcagGTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
EST: gi|211487335|gb|FL145768.1|FL145768
EST:     TCCCGGCCGTACTNGCGCGCGCGTGGGCTGCAGGCGTCGACCGCATCATT                         GTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
genomic: TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATTgtaagtgtgc ... ggggcggcagGTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
EST: gi|211484453|gb|FL145754.1|FL145754
EST:     TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGACCGCATCATT                         GTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
genomic: TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATTgtaagtgtgc ... ggggcggcagGTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
EST: gi|211481559|gb|FL145732.1|FL145732
EST:     TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGACCGCATCATT                         GTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
genomic: TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATTgtaagtgtgc ... ggggcggcagGTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
EST: gi|211484445|gb|FL145746.1|FL145746
EST:     TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGACCGCATCATT                         GTCACCGGAG-CTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
genomic: TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATTgtaagtgtgc ... ggggcggcagGTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
EST: gi|89251475|gb|DY623261.1|DY623261
EST:     TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATT                         GTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
genomic: TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATTgtaagtgtgc ... ggggcggcagGTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
EST: gi|211481563|gb|FL145736.1|FL145736
EST:     TCCCGGCCGTACTTGCGCGCGCGTGGGCTGCAGGCGTCGACCGCATCATT                         GTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
genomic: TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATTgtaagtgtgc ... ggggcggcagGTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
EST: gi|211484450|gb|FL145751.1|FL145751
EST:     TCCCGGCCGTACTTGCGCGCGCGTGGGCTGCAGGCGTCGACCGCATCATT                         GTCACCGGA-GCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
genomic: TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATTgtaagtgtgc ... ggggcggcagGTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
EST: gi|211481568|gb|FL145741.1|FL145741
EST:     TCCCGGCCGTACTTGCGCGCGCGTGGGCTGCAGGCGTCGACCGCATCATT                         GTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
genomic: TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATTgtaagtgtgc ... ggggcggcagGTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
EST: gi|78108903|gb|DV527320.1|DV527320
EST:     TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATT                         GTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
genomic: TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATTgtaagtgtgc ... ggggcggcagGTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
EST: gi|37421738|gb|CF648570.1|CF648570
EST:     TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATT                         GTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
genomic: TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATTgtaagtgtgc ... ggggcggcagGTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
EST: gi|211484449|gb|FL145750.1|FL145750
EST:     TCCCGGCCGTACTTGCGCGCGCGTGGGCTGCAGGCGTCGACCGCATCATT                         GTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
genomic: TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATTgtaagtgtgc ... ggggcggcagGTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
EST: gi|211487330|gb|FL145763.1|FL145763
EST:     TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGACCGCATCATT                         GTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
genomic: TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATTgtaagtgtgc ... ggggcggcagGTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
EST: gi|37419762|gb|CF647566.1|CF647566
EST:     TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATT                         GTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
genomic: TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATTgtaagtgtgc ... ggggcggcagGTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
EST: gi|211481565|gb|FL145738.1|FL145738
EST:     TCCCGGCCGTACTTGCGCGCGCGTGGGCTGCAGGCGTCGACCGCATCATT                         GTCACCGGA-GCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
genomic: TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATTgtaagtgtgc ... ggggcggcagGTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
EST: gi|211481570|gb|FL145743.1|FL145743
EST:     TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGACCGCATCATT                         GTCACCGGAG-CTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
genomic: TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATTgtaagtgtgc ... ggggcggcagGTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
EST: gi|211481560|gb|FL145733.1|FL145733
EST:     TCCCGGCCGTACTTGCGCGCGCGTGGGCTGCAGGCGTCGACCGCATCATT                         GTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
genomic: TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATTgtaagtgtgc ... ggggcggcagGTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
EST: gi|71325561|gb|DR799471.1|DR799471
EST:     TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATT                         GTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
genomic: TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATTgtaagtgtgc ... ggggcggcagGTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
EST: gi|211481561|gb|FL145734.1|FL145734
EST:     TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGACCGCATCATT                         GTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
genomic: TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATTgtaagtgtgc ... ggggcggcagGTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
EST: gi|211487331|gb|FL145764.1|FL145764
EST:     TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGACCGCATCATT                         GTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
genomic: TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATTgtaagtgtgc ... ggggcggcagGTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
EST: gi|211484443|gb|FL145744.1|FL145744
EST:     TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGACCGCATCATT                         GTCACCGGAG-CTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
genomic: TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATTgtaagtgtgc ... ggggcggcagGTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
EST: gi|14548489|gb|BI096833.1|BI096833
EST:     TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATT                         GTCACCGGAGGCTCCCTGAAAGAGTCCAGGGAGGCATTGCAGATCGCCGAG
genomic: TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATTgtaagtgtgc ... ggggcggcagGTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
EST: gi|87157799|gb|DY402588.1|DY402588
EST:     TCCCGGCCGTACTTGCGCGCGCGTGGGCTGCAGGCGTCGACCGCATCATT                         GTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG
genomic: TCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATTgtaagtgtgc ... ggggcggcagGTCACCGGAGGCTCCCTGAAAGAGTCCAGAGAGGCATTGCAGATCGCCGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACATCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATTgtaagtgtgcccccgccggtgtcgtctcttttctcgctgcctcctaacgcgcctcggtttcctggtaaattcttcccacccttgttttgctggggcggcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG