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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTGAAAGTCTTGATCCAGCCTTGCTTCGGCCAGGCCGTATAGACCGGAAGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgacgtctgtaaatgataatatttgcattaacaatgttcttaataccctttgttcttattatagaaggttgtaaacttgtgcag

Basic information

species Zea mays
transcript GRMZM2G095593_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G095593_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os07g49150.1 (Oryza sativa), 5'ss of exon 3
CATTGAAAGTCTTGATCCAGCCTTGCTTCGGCCAGGCCGTATAGACCGGAAGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgacgtctgtaaatgataatattt--gcattaacaatgttc--ttaataccctttgttcttattatagaaggttgtaaacttgtgcag
||| ||||||||||||||||| ||||| || || || || ||||| |||||||| ||||||||||| ||||||||||||||||| || |||||||||||||||      | |  |||  |  ||  | ||  | ||  |  ||      | |  |     | |  || | || ||| ||||| || | ||||||
CATCGAAAGTCTTGATCCAGCATTGCTACGCCCTGGTCGCATAGATCGGAAGATAGAATTTCCTCTGCCAGATATTAAAACTAGGCGGCGCATCTTCCAGgtaaatatccattagtatcttttagaacttcagaatgcatgataactgataagcagttcctttggttctcat-gaatgttgtgaa-tcgtgcag

upper sequence: GRMZM2G095593_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA03G32800.1 (Glycine max), 5'ss of exon 4
CATTGAAAGTCTTGATCCAGCCTTGCTTCGGCCAGGCCGTATAGACCGGAAGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgacgtctgtaaatgataatatttgcattaac------aatgtt----cttaataccctt--tgttctta-ttata------gaaggttgtaaacttgtgcag-----
 |||||||| ||||||||||| ||||| || || || || || ||| ||||||||||||||||||| || ||||||||||| ||| ||||||| |||||||||  |     | ||| || |  | | ||    || ||      | ||||    |||||||  |||  | | |||| |||||       |||||  || |||| || |      
AATTGAAAGCCTTGATCCAGCTTTGCTGCGACCTGGTCGAATTGACAGGAAGATTGAATTTCCTCTCCCTGATATTAAAACAAGAAGACGCATTTTCCAGgtag-gcacattttgtgaaagcaagttttcagtttcactgcttcactgttatatcttaatatgcttattctacttaattatatgactaaaaggtcttatacttctgaaatttag

upper sequence: GRMZM2G095593_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA13G19280.1 (Glycine max), 5'ss of exon 4
CATTGAAAGTCTTGATCCAGCCTTGCTTCGGCCAGGCCGTATAGACCGGAAGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtac-tgtgacg-----tctgtaaatgata-------atatttgcattaac--aatgttcttaataccctttgttcttattatagaaggttgtaaacttgtgcag
 |||||||||||||||||||| ||||| || || || || || ||| ||||||| ||||||||||| || ||||| ||||| ||  |||||||||||||||||    ||||      | || ||   |||        | ||||    | |   |||  ||        | |||||||  | |||    || |    ||||    
AATTGAAAGTCTTGATCCAGCTTTGCTACGACCTGGTCGAATTGACAGGAAGATAGAATTTCCTCTTCCTGATATCAAAACAAGGAGACGCATCTTCCAGgtaggcatgactaattttgtgaaagcaatacacccatgtgtttgggaaagcttgatggcctggtccatttgtgttctttctttag----ttttgtttttgtttt-

upper sequence: GRMZM2G095593_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA10G04920.1 (Glycine max), 5'ss of exon 4
CATTGAAAGTCTTGATCCAGCCTTGCTTCGGCCAGGCCGTATAGACCGGAAGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtac-tgtgacgtctgtaaatgataatatttgcattaacaatgttcttaataccctttgtt--cttattatagaag-gttgtaaacttgtgcag--------
 |||||||||||||||||||| ||||| ||||| || || || ||| ||||||| ||||||||||| || ||||| ||||| ||  |||||||||| ||||||    ||||   | |   ||| |  | |  ||   || ||||  ||   |    ||| |  | |  |  |   | ||| |    || |            
AATTGAAAGTCTTGATCCAGCTTTGCTACGGCCTGGTCGAATTGACAGGAAGATAGAATTTCCTCTTCCTGATATCAAAACAAGGAGACGCATCTTTCAGgtaggcatgactaattttg-tgaaagcaat-acacctaccatgtgtttgggaaatcttgatggcctggtccatttgtgttctttctttatttttgttttttt

upper sequence: GRMZM2G095593_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA19G35510.1 (Glycine max), 5'ss of exon 4
CATTGAAAGTCTTGATCCAGCCTTGCTTCGGCCAGGCCGTATAGACCGGAAGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgt----actgtgacgtctgtaaatgataatatttg-----cattaaca-------atgttcttaataccctttgttct-tatta-tagaaggttgtaaacttgtgcag-----
 |||||||| |||||||||||| |||| || || || || || ||| ||||||||||||||||||| || ||||| ||||| ||| ||||||| ||||||||    |     |  ||||| ||      | ||||     || | |||       || ||| || |   ||| ||| | | | | || |||||  || |||| ||        
AATTGAAAGCCTTGATCCAGCCCTGCTGCGACCTGGTCGAATTGACAGGAAGATTGAATTTCCTCTCCCTGATATCAAAACAAGAAGACGCATTTTCCAGgtcggaatgactagttctgtgaaaacatgtttttggttttcactgacatatcttaatattcctattctacttagttatatctcactaaaaggtcttatacttttgatatttag

upper sequence: GRMZM2G095593_T01 (Zea mays), 5'ss of exon 3
lower sequence: AT2G20140.1 (Arabidopsis thaliana), 5'ss of exon 4
CATTGAAAGTCTTGATCCAGCCTTGCTTCGGCCAGGCCGTATAGACCGGAAGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac-----gtctgtaaatgataatatttgcattaacaatgttcttaataccctttgttcttattatagaaggttgtaaacttgtgcag
 || || |||||||| || ||  | ||| | |||||||| || ||| |||| || ||||| ||||| |||||||| ||||| ||| |||| ||||||||||| |    ||      ||  ||| |  |  |  ||   ||   ||| ||  ||  |   | || ||   || ||   |  ||  |   |  |   
GATCGAGAGTCTTGACCCGGCACTTCTTAGACCAGGCCGGATCGACAGGAAAATCGAATTCCCTCTTCCAGATATCAAAACAAGAAGACGTATCTTCCAGgttccacaactggtgatccttaagttttctttctttttttgtgaat-tttctagaaagatctgatcggtttttaattgcatgccattattag---

upper sequence: GRMZM2G095593_T01 (Zea mays), 5'ss of exon 3
lower sequence: Vv07s0005g05160.t01 (Vitis vinifera), 5'ss of exon 4
CATTGAAAGTCTTGATCCAGCCTTGCTTCGGCCAGGCCGTATAGACCGGAAGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgacgtctgtaaatgataatatttg-cattaacaatgttcttaataccctttgttcttattatagaaggttgtaaacttgtgcag---------------------------------------
 ||||||||| | |||||||| ||||||||||| || || |||||  ||||||||||||| ||||| || || |||||||| ||| ||||||| ||||||||||      || |   | |    | ||     ||| || || || | | | |   || || | |  |  |||      || || |                                            
AATTGAAAGTTTGGATCCAGCTTTGCTTCGGCCTGGTCGAATAGATAGGAAGATTGAATTCCCTCTTCCTGACATTAAAACAAGAAGACGCATTTTCCAGgtacatgtgtgtttaagattatgcaaatgcaatattcactatattttca-tccgacttcttgtgacaactgaatcaccaaacctggcttgattactattactaagcaaatctcatttatttaaattgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78023011|gb|DV491398.1|DV491398
EST:     AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG                         ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: gi|20300162|gb|BQ163105.1|BQ163105
EST:     AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG                         ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: gi|6095605|gb|AW120272.1|AW120272
EST:     AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG                         ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: gi|18963161|gb|BM660274.1|BM660274
EST:     AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG                         ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: gi|32935651|gb|CF040463.1|CF040463
EST:     AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG                         ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: gi|5296251|gb|AI782931.1|AI782931
EST:     AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG                         ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: gi|33095909|gb|CF055903.1|CF055903
EST:     AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG                         ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: gi|213170809|gb|FM191861.1|FM191861
EST:     AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG                         ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: gi|113704000|gb|EE681504.1|EE681504
EST:     AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG                         ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: gi|5762107|gb|AI967155.1|AI967155
EST:     AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG                         ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: gi|20507124|gb|BQ279496.1|BQ279496
EST:     AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG                         ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: gi|32906982|gb|CF011795.1|CF011795
EST:     GATATTAAAACTAGACGACGCATCTTCCAG                         ATACCACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTT
genomic: GATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATA-CACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTT
EST: gi|5296115|gb|AI782990.1|AI782990
EST:     AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG                         ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: gi|6194717|gb|AW146821.1|AW146821
EST:     AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG                         ATACACACATCGAAAATGACATTAGCT
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCT
EST: gi|22714021|gb|BU197442.1|BU197442
EST:     AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG                         ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: gi|149008286|gb|EE040435.2|EE040435
EST:     AGATTGAATTTCTTTTACCAGATATTAAAATTAGAGGACGCTTTTTCCAG                         ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: gi|32930331|gb|CF035143.1|CF035143
EST:     AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG                         ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: gi|211247443|gb|FL282637.1|FL282637
EST:     AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG                         ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: gi|8318691|gb|BE025256.1|BE025256
EST:     AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG                         ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: gi|21987744|gb|BQ779272.1|BQ779272
EST:     AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG                         ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: gi|8576996|gb|BE129633.1|BE129633
EST:     AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG                         ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: gi|5650403|gb|AI920763.1|AI920763
EST:     ATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG                         ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
genomic: ATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: gi|18661880|gb|BM501630.1|BM501630
EST:     AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG                         ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: gi|5847225|gb|AW000304.1|AW000304
EST:     AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG                         ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: gi|5901265|gb|AW042365.1|AW042365
EST:     AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG                         ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: gi|20513035|gb|BQ280221.1|BQ280221
EST:     AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG                         ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: gi|32936539|gb|CF041358.1|CF041358
EST:     GATATTAAAACTAGACGACGCATCTTCCAG                         ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
genomic: GATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: gi|18654858|gb|BM499663.1|BM499663
EST:     GATTGAATTTCCTGCTACCAGATATTAAAACTAGACGACGCATCTTCCAG                         ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
genomic: GATTGAATTTCCT-CTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: gi|5325130|gb|AI783321.1|AI783321
EST:     AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG                         ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: gi|56382674|gb|CV985343.1|CV985343
EST:     AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG                         ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: gi|5846790|gb|AI999873.1|AI999873
EST:     AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG                         ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: gi|211247441|gb|FL282635.1|FL282635
EST:     AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG                         ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: gi|22472561|gb|BU037041.1|BU037041
EST:     AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG                         ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 749

CATTGAAAGTCTTGATCCAGCCTTGCTTCGGCCAGGCCGTATAGACCGGAAGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTTGTTATGACCAAAGACGAGTTTTCGGGTGCTGATATTAAGGCAATCTGCA


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 787

CATTGAAAGTCTTGATCCAGCCTTGCTTCGGCCAGGCCGTATAGACCGGAAGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTTGTTATGACCAAAGACGAGTTTTCGGGTGCTGATATTAAGGCAATCTGCA


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 679

CATTGAAAGTCTTGATCCAGCCTTGCTTCGGCCAGGCCGTATAGACCGGAAGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTTGTTATGACCAAAGACGAGTTTTCGGGTGCTGATATTAAGGCAATCTGCA


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 896

CATTGAAAGTCTTGATCCAGCCTTGCTTCGGCCAGGCCGTATAGACCGGAAGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTTGTTATGACCAAAGACGAGTTTTCGGGTGCTGATATTAAGGCAATCTGCA