1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
CGGAAGTTCGCTCAACGGTCGGAGAGGGTCAAGTCGGTGGATTTGCACCCCACGGAGCCATGgtaagttccgatcctgttatgggtcgttcactgaatttccagccatttctgctgcttgtgcttactgttttggtgtgcttgttgattatatgtggattgcattgtgcag
species | Zea mays |
transcript | GRMZM2G095348_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ACGGCTCGGTGTAGGGTCAAGTCGGTGGATTTGCACCCCACGGAGCCATG GATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGCEST: gi|78122343|gb|DV540727.1|DV540727
genomic: ACGG-TCGGAG-AGGGTCAAGTCGGTGGATTTGCACCCCACGGAGCCATGgtaagttccg ... cattgtgcagGATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGC
EST: CAACGGTCGGAGAGGGTCAAGTCGGGGGATTTGCCCCCCGCGGAGCCGTG GATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGCEST: gi|18654986|gb|BM499791.1|BM499791
genomic: CAACGGTCGGAGAGGGTCAAGTCGGTGGATTTGCACCCCACGGAGCCATGgtaagttccg ... cattgtgcagGATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGC
EST: CAACGGTCGGAGAGGGTCAAGTCGGTGGATTTGCACCCCACGGAGCCATG GATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGCEST: gi|22489991|gb|BU049914.1|BU049914
genomic: CAACGGTCGGAGAGGGTCAAGTCGGTGGATTTGCACCCCACGGAGCCATGgtaagttccg ... cattgtgcagGATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGC
EST: CAACGGTCGGAGAGGGTCAAGTCGGTGGATTTGCNCCCCACGGAGCCATG GATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGCEST: gi|18655044|gb|BM499849.1|BM499849
genomic: CAACGGTCGGAGAGGGTCAAGTCGGTGGATTTGCACCCCACGGAGCCATGgtaagttccg ... cattgtgcagGATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGC
EST: CAACGGTCGGAGAGGGTCAAGTCGG-GGA-TTGCACCCCACGGAGCCATG GATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGCEST: gi|18655016|gb|BM499821.1|BM499821
genomic: CAACGGTCGGAGAGGGTCAAGTCGGTGGATTTGCACCCCACGGAGCCATGgtaagttccg ... cattgtgcagGATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGC
EST: CAACGG-CGGAGAGGG-CAAGTCGGTGGA-TTGCACCCCACGGAGCCATG GATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGCEST: gi|18662028|gb|BM501705.1|BM501705
genomic: CAACGGTCGGAGAGGGTCAAGTCGGTGGATTTGCACCCCACGGAGCCATGgtaagttccg ... cattgtgcagGATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGC
EST: AACGGTCGGAGAGGGTCATAGTCGGTGGA-TTGCACCCCACGGAGCCATG GTATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGEST: gi|89106409|gb|DY576626.1|DY576626
genomic: AACGGTCGGAGAGGGTCA-AGTCGGTGGATTTGCACCCCACGGAGCCATGgtaagttccg ... cattgtgcagG-ATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAG
EST: CAACGGTCGGAGAGGGTCAAGTCGGTGGATTTGCACCCCACGGAGCCATG GATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGCEST: gi|18655043|gb|BM499848.1|BM499848
genomic: CAACGGTCGGAGAGGGTCAAGTCGGTGGATTTGCACCCCACGGAGCCATGgtaagttccg ... cattgtgcagGATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGC
EST: TCGGTGGATTTGCACCCCACGG-GCCATG GATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGCEST: gi|18654807|gb|BM499612.1|BM499612
genomic: TCGGTGGATTTGCACCCCACGGAGCCATGgtaagttccg ... cattgtgcagGATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGC
EST: CAACGGTCGGAGAGGGTCAAGTCGGTGGATTTGCACCCCACGGAGCCATG GATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGCEST: gi|22489999|gb|BU049922.1|BU049922
genomic: CAACGGTCGGAGAGGGTCAAGTCGGTGGATTTGCACCCCACGGAGCCATGgtaagttccg ... cattgtgcagGATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGC
EST: AACGGTCGGAGAGGGTCAAGTCGGTGGATTTGCACCCCACGGGAGCCATG GATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGEST: gi|18649626|gb|BM498445.1|BM498445
genomic: AACGGTCGGAGAGGGTCAAGTCGGTGGATTTGCACCCCAC-GGAGCCATGgtaagttccg ... cattgtgcagGATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAG
EST: CAACGGTCGGAGAGGGTCAAGTCGG-GGA-TTGCACCCCACGGAGCCATG GATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGCEST: gi|18661996|gb|BM501688.1|BM501688
genomic: CAACGGTCGGAGAGGGTCAAGTCGGTGGATTTGCACCCCACGGAGCCATGgtaagttccg ... cattgtgcagGATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGC
EST: GATTTGCACCCCACGGAGCCATG GATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGC
genomic: GATTTGCACCCCACGGAGCCATGgtaagttccg ... cattgtgcagGATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGAAGTTCGCTCAACGGTCGGAGAGGGTCAAGTCGGTGGATTTGCACCCCACGGAGCCATGgtaagttccgatcctgttatgggtcgttcactgaatttccagccatttctgctgcttgtgcttactgttttggtgtgcttgttgattatatgtggattgcattgtgcag
- - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - GGTGGA