Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatctggtgcccttgattcccattgtgataggttcttgttagcaaaagattagttaagtgcattgtttgattttgaggtgaatctgatagtaacattatggggtaccagttatttctgtctttcctgtagtaaaggtttataatggctggaattgcag

Basic information

species Zea mays
transcript GRMZM2G095114_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G095114_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g15310.1 (Oryza sativa), 5'ss of exon 3
CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatctggtgcccttgattcccattg-tgataggttcttgttag--caaaagattagttaagtgcattgtttgattttgaggtgaatctgatagtaacattatggggtaccagttatttctgtctttcctgtagtaaaggtttataatggctggaattgcag
||||||||||| ||||| || |||||||||||||||||  |||| || ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||  ||| |   ||  ||  | | | | |  ||| || | ||  |  ||||||||||||     ||||||||||  |||| ||  |||  |       ||||                                                             
CTCGTGGAGCTTAAGAACGGCGAGACGTACAACGGGCACTTGGTGAACTGCGACACGTGGATGAACATCCACCTCCGGGAGGTTATTTGCACCTCAAAGgtgaaa--tctcgcatccccgacccacttcgcttgtagattttagtggggacaaaagattagtg----gcattgtttggatttggggaaaatagggagtagccatt-------------------------------------------------------------

upper sequence: GRMZM2G095114_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA19G39780.1 (Glycine max), 5'ss of exon 3
CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatctggtgcccttgattcccattgtgataggttcttgttagcaaaagattagttaagtgcattgtttgattttgaggtgaatctgatagtaacattatggggtaccagttatttctgtctttcctgtagtaaaggtttataatggctggaattgcag
 | ||||| ||||| ||||| ||||| || ||||||||| |||| |||||||| || |||||||||||||| ||  | || || ||||| || || || || |      || |||  ||     || |||   | | || |||||  |     |||   | | ||   ||      |||||  | ||| ||  | |                                                                   
TTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGCGATACATGGATGAACATCCATCTCCGAGAAGTCATTTGTACATCTAAAgtaa------tgttgcttttacgatcccttgc--ttgttttttgttgtcttgtaatt---tgattgtgatggaaaggtttgatttcaat-tggcaatgtag---------------------------------------------------------------

upper sequence: GRMZM2G095114_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA03G37170.2 (Glycine max), 5'ss of exon 3
CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatctggtgcccttgattcccattgtgataggttcttgttagcaaaagattagttaagtgcattgtttgattttgaggtgaatctgatagtaacattatggggtaccagttatttctgtctttcctgtagtaaaggtttataatggctggaattgcag
 | ||||| ||||| ||||| ||||| || ||||||||| |||| ||||||||||| |||||||||||||| ||  | || || ||||| || || || || |      || |||  ||     || |||   | | || |||||  |     ||| | | | || || |       ||||  | ||| |  | ||||  |                                                              
TTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGCGACACATGGATGAACATCCATCTGCGAGAAGTCATTTGTACATCTAAAgtaa------tgttgcttttacgatcccttgc--ttgttttttgttgtcttgtaatttggtta-tg-atggaaaaggcttgatttaaattt--tggtaatgtag------------------------------------------------------------

upper sequence: GRMZM2G095114_T01 (Zea mays), 5'ss of exon 3
lower sequence: AT5G27720.1 (Arabidopsis thaliana), 5'ss of exon 4
CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatctggtgcccttgattcccattgtgataggttcttgttagcaaaagattagttaagtgcattgtttgattttgaggtgaatctgatagtaacattatggggtaccagttatttctgtctttcctgtagtaaaggtttataatggctggaattgcag
||||||||||| |||||||| ||||| ||||| |||||| |||| ||||| || || |||||||||||||| ||  | || || || || || ||||||||     ||||  ||             || | ||| |||  |   |  | |   |   |  | | | |  |   ||||||   || | |||| | | | ||  |  | | |  | |   |||                                         
CTCGTGGAGCTTAAGAATGGAGAGACATACAATGGGCATTTGGTGAATTGTGATACTTGGATGAACATCCATCTGCGTGAAGTCATATGTACATCAAAGgtt----atcttatg-------------ttttcatatgttgatacaaatatactttgtttagacttcgtgatgaaattttg---tgtagctgacactcatatattttgctgcttgattactctag---------------------------------------

upper sequence: GRMZM2G095114_T01 (Zea mays), 5'ss of exon 3
lower sequence: PP1S36_327V6.2 (Physcomitrella patens), 5'ss of exon 2
CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatctgg-tgcccttgattcccattgtgataggttcttgttagcaaaagattagtta--agtgcattgtttgattttgaggtgaatctgatagtaacattatggggt-accagttatttctgtctttcctgtagtaaaggtttataatggctggaattgcag
|| || ||||| || ||||| ||||| || ||||| ||| | || || || || || ||||||||||| |||||  | || ||||||||||||||||||||||  | | | | | || ||   |   |  ||  |      |  |  ||        || |    || |||  |||   ||  || |||||    | |    ||| |  | |    | | ||| || |   |  | || |  |  | |         || |||| ||
CTTGTCGAGCTCAAAAATGGAGAGACTTATAACGGCCATTTAGTAAACTGTGATACATGGATGAACATTCACCTACGTGAAGTTATTTGCACCTCAAAGgtgattatttttgctaccattatctattagggttttcaaag-tgatctgcctcgtcccagctgctggttcat-atttatattgcagatgaattaatttgagttattcttcgattgttattgattccttttggttttataatggatatgtg--------ggcattgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50324422|gb|CO519548.1|CO519548
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|211192048|gb|FL055486.1|FL055486
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|211194451|gb|FL055502.1|FL055502
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|18165654|gb|BM335493.1|BM335493
EST:     TTTGCACCTCAAAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
genomic: TTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|211194439|gb|FL055490.1|FL055490
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|211196844|gb|FL055505.1|FL055505
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|4612896|gb|AI603735.1|AI603735
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCG
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCG
EST: gi|211194442|gb|FL055493.1|FL055493
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTTTG
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTG
EST: gi|211196843|gb|FL055504.1|FL055504
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|211196851|gb|FL055512.1|FL055512
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|60356830|gb|DN223803.1|DN223803
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|211196849|gb|FL055510.1|FL055510
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|60397418|gb|DN230234.1|DN230234
EST:     CTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
genomic: CTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|211196854|gb|FL055515.1|FL055515
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|32804087|gb|CD956323.1|CD956323
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|13558271|gb|BG549627.1|BG549627
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACCAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|32788395|gb|CD940631.1|CD940631
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|32801928|gb|CD954164.1|CD954164
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACT
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|211288302|gb|FL055521.1|FL055521
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|60356922|gb|DN223895.1|DN223895
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|5566778|gb|AI881644.1|AI881644
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|211194450|gb|FL055501.1|FL055501
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|78023597|gb|DV491984.1|DV491984
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|9254191|gb|BE344659.1|BE344659
EST:     TTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
genomic: TTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|211194438|gb|FL055489.1|FL055489
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|211194445|gb|FL055496.1|FL055496
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|211288305|gb|FL055524.1|FL055524
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTTTSGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|211194444|gb|FL055495.1|FL055495
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|211192050|gb|FL055488.1|FL055488
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|13558630|gb|BG549986.1|BG549986
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTCTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|50324421|gb|CO519547.1|CO519547
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|9254192|gb|BE344660.1|BE344660
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|32795180|gb|CD947416.1|CD947416
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|76012388|gb|DT939558.1|DT939558
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|211288303|gb|FL055522.1|FL055522
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|19350796|gb|BM895328.1|BM895328
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|60337877|gb|DN204850.1|DN204850
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|18180735|gb|BM381945.1|BM381945
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|211194452|gb|FL055503.1|FL055503
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|211194446|gb|FL055497.1|FL055497
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|211196847|gb|FL055508.1|FL055508
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|211192049|gb|FL055487.1|FL055487
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|211194440|gb|FL055491.1|FL055491
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCANAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|211196857|gb|FL055518.1|FL055518
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|211194441|gb|FL055492.1|FL055492
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|84980176|gb|DW530525.1|DW530525
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|211196856|gb|FL055517.1|FL055517
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|211196848|gb|FL055509.1|FL055509
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|17929737|gb|BM266649.1|BM266649
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|211288300|gb|FL055519.1|FL055519
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|211196855|gb|FL055516.1|FL055516
EST:     CGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCCTCAAAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACAC
genomic: CGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACC-TCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACAC
EST: gi|32804206|gb|CD956442.1|CD956442
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|211196852|gb|FL055513.1|FL055513
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|16927222|gb|BM080291.1|BM080291
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|211196845|gb|FL055506.1|FL055506
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|211288306|gb|FL055525.1|FL055525
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|211192047|gb|FL055485.1|FL055485
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|211194443|gb|FL055494.1|FL055494
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|71313635|gb|DR793393.1|DR793393
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC
EST: gi|32801729|gb|CD953965.1|CD953965
EST:     GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG                         GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACT
genomic: GCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 339

CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG


Block sizes: 47 (upstream exon), 48 (downstream exon)
Score: 292

CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG


Block sizes: 47 (upstream exon), 48 (downstream exon)
Score: 200

CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 171

CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatc ... ggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG