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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGGGAAGCCCCTAGTGCTGAACGTGGTCAGGCGCGCCGAGCAAATGTTGATCAATAATCCgtaagtgtcatgtgaaatccatatgacccgcttgatttcgtgatcgtgcctctgtggttattgaactttcaggcttaaagctcctgccctcagcccaagt...

Basic information

species Zea mays
transcript GRMZM2G094712_T04
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G094712_T04 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g55540.1 (Oryza sativa), 5'ss of exon 3
GAAGGGAAGCCCCTAGTGCTGAACGTGGTCAGGCGCGCCGAGCAAATGTTGATCAATAATCCgtaagtgtcatgtgaaatccatatgacccgcttgatttcgtgatcgtgcctctgtggttattgaactttc-aggcttaaagctcctgccctcagcccaagt---
|||||||||||||| |||||||| |||||||||||||| ||||| ||| ||||||| || |||||||| | || ||||| ||| |||| |||| ||||||||     | |  | |    || ||   ||  |   |  || || | | |   ||| |     |   
GAAGGGAAGCCCCTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctgatttgaaaaccagatgatccgcatgatttcggacctgggaattt----tttttaggctggctgagtgtacagattccgtgttcaacttgcctcta

upper sequence: GRMZM2G094712_T04 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g55540.2 (Oryza sativa), 5'ss of exon 3
GAAGGGAAGCCCCTAGTGCTGAACGTGGTCAGGCGCGCCGAGCAAATGTTGATCAATAATCCgtaagtgtcatgtgaaatccatatgacccgcttgatttcgtgatcgtgcctctgtggttattgaactt-tcaggcttaaagctcctgccctcagcccaagt---
         ||||| |||||||| |||||||||||||| ||||| ||| ||||||| || |||||||| | || ||||| ||| |||| |||| ||||||||     | |  | |    || ||   ||      |  || || | | |   ||| |     |   
---------CCCCTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctgatttgaaaaccagatgatccgcatgatttcggacctgggaattt----tttttaggctggctgagtgtacagattccgtgttcaacttgcctcta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67021032|gb|CO449781.1|CO449781
EST:     GCTGAACGTGGTCAGGCGCGCCGAGCAAATGTTGATCAATAATCC                         GTCACGTGTCAAGGAGTACCTACCAATCACCGGTCTGGCTGAATTCAATAA
genomic: GCTGAACGTGGTCAGGCGCGCCGAGCAAATGTTGATCAATAATCCgtaagtgtca ... ttatttctagGTCACGTGTCAAGGAGTACCTACCAATCACCGGTCTGGCTGAATTCAATAA
EST: gi|18385028|gb|BM418227.1|BM418227
EST:     CTAGTGCTGAACGTGGTCAGGCGCGCCGAGCAAATGTTGATCAATAATCC                         GTCACGTGTCAAGGAGTACCTACCAATCACCGGTCTGGCTGAATTCAATAA
genomic: CTAGTGCTGAACGTGGTCAGGCGCGCCGAGCAAATGTTGATCAATAATCCgtaagtgtca ... ttatttctagGTCACGTGTCAAGGAGTACCTACCAATCACCGGTCTGGCTGAATTCAATAA
EST: gi|211351968|gb|FL217074.1|FL217074
EST:     CTAGTGCTGAACGTGGTCAGGCGCGCCGAGCAAATGTTGATCAATAATCC                         GTCACGTGTCAAGGAGTACCTACCAATCACCGGTCTGGCTGAATTCAATAA
genomic: CTAGTGCTGAACGTGGTCAGGCGCGCCGAGCAAATGTTGATCAATAATCCgtaagtgtca ... ttatttctagGTCACGTGTCAAGGAGTACCTACCAATCACCGGTCTGGCTGAATTCAATAA
EST: gi|61119383|gb|DN560344.1|DN560344
EST:     CTAGTGCTGAACGTGGTCAGGCGCGCCGAGCAAATGTTGATCAATAATCC                         GTCACGTGTCAAGGAGTACCTACCAATCACCGGTCTGGCT
genomic: CTAGTGCTGAACGTGGTCAGGCGCGCCGAGCAAATGTTGATCAATAATCCgtaagtgtca ... ttatttctagGTCACGTGTCAAGGAGTACCTACCAATCACCGGTCTGGCT
EST: gi|18385008|gb|BM418207.1|BM418207
EST:     CTAGTGCTGAACGTGGTCAGGCGCGCCGAGCAAATGTTGATCAATAATCC                         GTCACGTGTCAAGGAGTACCTACCA-TCACCGGTCTGGCTGAATTCA-TAA
genomic: CTAGTGCTGAACGTGGTCAGGCGCGCCGAGCAAATGTTGATCAATAATCCgtaagtgtca ... ttatttctagGTCACGTGTCAAGGAGTACCTACCAATCACCGGTCTGGCTGAATTCAATAA