1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GAAATTGTAAACATCCGACTTGGAGATGGCACCAATCGCCGTGGTCAAGTCCTGGAAGTTGATGGCGAAAAAGCTGTTGTGCAGgttacttctccattctcctgattgttttttagcagtagttctaatttgattttgattctgcagtatggtcatgttagttccattcccagaaaacttagtttgttaattaactgcattattcatcag
species | Zea mays |
transcript | GRMZM2G094497_T02 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATCGCCGTGGTCAAGTCCTGGAAGTTGATGGCGAAAAAGCTGTTGTGCAG GTCTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGEST: gi|32929168|gb|CF033980.1|CF033980
genomic: ATCGCCGTGGTCAAGTCCTGGAAGTTGATGGCGAAAAAGCTGTTGTGCAGgttacttctc ... tattcatcagGTCTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCG
EST: ATCGCCGTGGTCAAGTCCTGNAAGTTGATGGCGAAAAAGCTGTTGTGCAG GTCTNTGAAGGAACTTCTGGAATAGACAACAAATACACANCCGTGCAG-TTEST: gi|32838409|gb|CD978087.1|CD978087
genomic: ATCGCCGTGGTCAAGTCCTGGAAGTTGATGGCGAAAAAGCTGTTGTGCAGgttacttctc ... tattcatcagGTCTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
EST: ATCGCCGTGGTCAAGTCCTGGAAGTTGATGGCGAAAAAGCTGTTGTGCAG GTCTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTEST: gi|194716810|gb|FK933969.1|FK933969
genomic: ATCGCCGTGGTCAAGTCCTGGAAGTTGATGGCGAAAAAGCTGTTGTGCAGgttacttctc ... tattcatcagGTCTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
EST: ATCGCCGTGGTCAGGTCCTGGAAGTTGATGGCGAAAAAGCTGTTGTGCAG GTCTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACTGTGCAGTTTEST: gi|33102277|gb|CF062237.1|CF062237
genomic: ATCGCCGTGGTCAAGTCCTGGAAGTTGATGGCGAAAAAGCTGTTGTGCAGgttacttctc ... tattcatcagGTCTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
EST: ATCGCCGTGGTCAAGTCCTGGAAGTTGATGGCGAAAAAGCTGTTGTGCAG GTCTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
genomic: ATCGCCGTGGTCAAGTCCTGGAAGTTGATGGCGAAAAAGCTGTTGTGCAGgttacttctc ... tattcatcagGTCTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAATTGTAAACATCCGACTTGGAGATGGCACCAATCGCCGTGGTCAAGTCCTGGAAGTTGATGGCGAAAAAGCTGTTGTGCAGgttacttctccattctcctgattgttttttagcagtagttctaatttgattttgattctgcagtatggtcatgttagttccattcccagaaaacttagtttgttaattaactgcattattcatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT