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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACGCGGGGAGCGACAAGTCGTGCGTGTGGCACGCGCTGGACTTCGCCGACGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacctcgaaccatatcttacctgcctctttatcccttcttgcatctgttcgtagctagcagcctgcactgttacaatgtttggtacctctgttga...

Basic information

species Zea mays
transcript GRMZM2G094388_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G094388_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g18180.1 (Oryza sativa), 5'ss of exon 3
CACGCGGGGAGCGACAAGTCGTGCGTGTGGCACGCGCTGGACTTCGCCGACGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacctcgaaccatatcttacctgcctctttatcccttcttgcatctgttcgtagctagcagcctgc-actgttacaatgt-ttggtacctctgttga-
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || || || |||||||| ||||||||| |||||     |||  |    |  |   |  ||   |||| |||  |||   |  |  ||  |  |||| | |  ||  ||||  | | |      |||| 
CACGCCGGCAGCGACAAGTCGTGCGTGTGGCACGCGCTGGACTTCGCCGACGGCGAGCTCAAGGAGGAAATGTTCGCCATACGCTTTGGATCCGTCGAGAgtaagcactaaacaccccaag--aattatgtagttgctcctt-ttgtttcttaaccaaaatattatactgctagtagtagcatgtgcttggatgggctttgag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60291861|gb|DN190100.1|DN190100
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|33942511|gb|CF349111.1|CF349111
EST:     CAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|211524511|gb|FK953546.1|FK953546
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|211444672|gb|FL108189.1|FL108189
EST:     CGGCGAGCTCNAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         -TTNGCAAGAAGTTCAGGGACACTGTTGNAGAGATAGCTGAACAGCAAGGG
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATT-GCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGA
EST: gi|24773497|gb|CA408751.1|CA408751
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|60339963|gb|DN206936.1|DN206936
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|30087902|gb|CB886107.1|CB886107
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|6918653|gb|AW400183.1|AW400183
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         AGTGCAAGAAGTTCAAGGGCACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|32936687|gb|CF041506.1|CF041506
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|60394921|gb|DN227790.1|DN227790
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|60357942|gb|DN224915.1|DN224915
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|4776175|gb|AI665178.1|AI665178
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|60356330|gb|DN223303.1|DN223303
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|33100621|gb|CF060581.1|CF060581
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|149062846|gb|EE157564.2|EE157564
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|32800359|gb|CD952595.1|CD952595
EST:     GATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: GATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|60348344|gb|DN215317.1|DN215317
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|24934832|gb|CA453050.1|CA453050
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|149066733|gb|EE286873.2|EE286873
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|32823161|gb|CD962883.1|CD962883
EST:     GATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: GATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|211446790|gb|FL108208.1|FL108208
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|71299956|gb|DR786030.1|DR786030
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|24773965|gb|CA409219.1|CA409219
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|40334745|gb|CK368815.1|CK368815
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACATTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|211088627|gb|FL437493.1|FL437493
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|21331291|gb|BQ486672.1|BQ486672
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|211524510|gb|FK953545.1|FK953545
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACCGCCAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|78544695|gb|DV622193.1|DV622193
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|149077400|gb|EE166087.2|EE166087
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|29946785|gb|CB816324.1|CB816324
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|31405548|gb|CD484280.1|CD484280
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACCCTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|21828580|gb|BQ703264.1|BQ703264
EST:     TCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACTCTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: TCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|5929008|gb|AW056300.1|AW056300
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|71767759|gb|DR965696.1|DR965696
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|28983503|gb|BQ538693.2|BQ538693
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|71315734|gb|DR794501.1|DR794501
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTTTCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGACCAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|91873482|gb|EB403439.1|EB403439
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|33103988|gb|CF063948.1|CF063948
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGACCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|149104616|gb|EE290065.2|EE290065
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|4835091|gb|AI670317.1|AI670317
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|91050171|gb|EB160589.1|EB160589
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|31405549|gb|CD484281.1|CD484281
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|8401382|gb|BE057016.1|BE057016
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|60358972|gb|DN225945.1|DN225945
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|71315736|gb|DR794502.1|DR794502
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|28931366|gb|CB334727.1|CB334727
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|24934861|gb|CA453079.1|CA453079
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|37378188|gb|CF625762.1|CF625762
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACATTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|211444678|gb|FL108195.1|FL108195
EST:     GGCGAGCTCAAAGAGGAGATGTTTGCTATCCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGC
genomic: GGCGAGCTCAAAGAGGAGATGTTTGCTATCC-GTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGC
EST: gi|149080146|gb|EE169164.2|EE169164
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|148938960|gb|EC883328.2|EC883328
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|32823219|gb|CD962941.1|CD962941
EST:     GATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: GATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|24961573|gb|CA483578.1|CA483578
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|24774200|gb|CA409454.1|CA409454
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|60357716|gb|DN224689.1|DN224689
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|60356705|gb|DN223678.1|DN223678
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|149104615|gb|EE290064.2|EE290064
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|149009987|gb|EE041812.2|EE041812
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|60342879|gb|DN209852.1|DN209852
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|148958579|gb|EC904825.2|EC904825
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|32945853|gb|CF050672.1|CF050672
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCGAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|149015774|gb|EE045472.2|EE045472
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|94475255|gb|EB704213.1|EB704213
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|5124404|gb|AI746140.1|AI746140
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|67012046|gb|CO440795.1|CO440795
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|149009986|gb|EE154183.2|EE154183
EST:     GTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: GTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|67032131|gb|CO460880.1|CO460880
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|24773561|gb|CA408815.1|CA408815
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|148980654|gb|EE027272.2|EE027272
EST:     GGCGGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: GGC-GAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|16927427|gb|BM080496.1|BM080496
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|24773178|gb|CA408432.1|CA408432
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|71767760|gb|DR965697.1|DR965697
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|148956502|gb|EC902339.2|EC902339
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|211524512|gb|FK953547.1|FK953547
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGAAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|60339731|gb|DN206704.1|DN206704
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA
EST: gi|29945753|gb|CB815802.1|CB815802
EST:     CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGA                         ATTGCAAGAAGTTCAAGGACNCTGTTGAAGAGATAGCTGAACAGCAAGGAA
genomic: CGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 428

CACGCGGGGAGCGACAAGTCGTGCGTGTGGCACGCGCTGGACTTCGCCGACGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAAAGAGCGAGGAGAAAGAAAATGATGAAGTCTCCACTGCCGCTTCTGATTT


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 731

CACGCGGGGAGCGACAAGTCGTGCGTGTGGCACGCGCTGGACTTCGCCGACGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAAAGAGCGAGGAGAAAGAAAATGATGAAGTCTCCACTGCCGCTTCTGATTT


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 464

CACGCGGGGAGCGACAAGTCGTGCGTGTGGCACGCGCTGGACTTCGCCGACGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAAAGAGCGAGGAGAAAGAAAATGATGAAGTCTCCACTGCCGCTTCTGATTT


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 291

CACGCGGGGAGCGACAAGTCGTGCGTGTGGCACGCGCTGGACTTCGCCGACGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacct ... tctatttcagATTGCAAGAAGTTCAAGGACACTGTTGAAGAGATAGCTGAACAGCAAGGAAAGAGCGAGGAGAAAGAAAATGATGAAGTCTCCACTGCCGCTTCTGATTT


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CACGCGGGGAGCGACAAGTCGTGCGTGTGGCACGCGCTGGACTTCGCCGACGGCGAGCTCAAAGAGGAGATGTTTGCTATCCGTTTTGGATCTGTCGAGAgtgagcacctcgaaccatatcttacctgcctctttatcccttcttgcatctgttcgtagctagcagcctgcactgttacaatgtttggtacctctgttga

- - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG