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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCATCACATGGACTCTTTGATGTCTACGTTAAAGCAATAGGCGACACCCATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACGgtgattattactttccaagagtatttgttgttttcacttctagaagcatttgtagggatgattattaacttgaggttaggacatccatgtattttccttt...

Basic information

species Zea mays
transcript GRMZM2G094255_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G094255_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os04g52710.1 (Oryza sativa), 5'ss of exon 3
GGCATCACATGGACTCTTTGATGTCTACGTTAAAGCAATAGGCGACACCCATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACGgtgattattactttccaagagtatttgttgttttcacttctagaagcatttgtagggatgattattaacttgaggttaggacatccatg----tattttccttt---
|||||| ||||| |||||||| || |  ||||| ||||  || ||||| || || ||||| ||||||||||| || ||||| |||||||||||||||||||| ||| || |||||         || |  |||   |||||||||  | ||||||| || ||||| || |  ||||||||  ||||||      ||  | ||||   
GGCATCTCATGGGCTCTTTGACGTATGTGTTAAGGCAAAGGGTGACACTCACATCGATGACCATCACTCAAACGAAGACATCGCTTTGGCAATTGGAACGgtaattgttgctttcac------cttatcatttctgcttctagaaatacttgtagg-atcattatgaattgaaggttagggtatccataatttcatacttcttttcc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76281018|gb|DV020586.1|DV020586
EST:     ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACG                         GCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCAT
genomic: ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACGgtgattatta ... gtctatgtagGCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCAT
EST: gi|211006666|gb|FL081503.1|FL081503
EST:     ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACG                         GCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCAT
genomic: ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACGgtgattatta ... gtctatgtagGCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCAT
EST: gi|211006657|gb|FL081494.1|FL081494
EST:     ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACG                         GCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCAT
genomic: ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACGgtgattatta ... gtctatgtagGCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCAT
EST: gi|211003886|gb|FL081493.1|FL081493
EST:     ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACG                         GCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCAT
genomic: ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACGgtgattatta ... gtctatgtagGCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCAT
EST: gi|149110134|gb|EE293952.2|EE293952
EST:     ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACG                         GCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCAT
genomic: ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACGgtgattatta ... gtctatgtagGCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCAT
EST: gi|88757021|gb|DY541162.1|DY541162
EST:     ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACG                         GCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCAT
genomic: ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACGgtgattatta ... gtctatgtagGCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCAT
EST: gi|211006669|gb|FL081506.1|FL081506
EST:     ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACG                         GCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCAT
genomic: ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACGgtgattatta ... gtctatgtagGCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCAT
EST: gi|211006664|gb|FL081501.1|FL081501
EST:     ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACG                         GCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCAT
genomic: ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACGgtgattatta ... gtctatgtagGCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCAT
EST: gi|91056439|gb|EB166857.1|EB166857
EST:     ATATTGATGATCATCACTCAAATGAGGACTTTGCTTTGGCAATTGGAACG                         GCACTACTTGAAGCACTGGGTGATCGAAAGGGAAT-AACCG
genomic: ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACGgtgattatta ... gtctatgtagGCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCG
EST: gi|31611949|gb|CD568571.1|CD568571
EST:     ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACG                         GCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCAT
genomic: ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACGgtgattatta ... gtctatgtagGCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCAT
EST: gi|211006671|gb|FL081508.1|FL081508
EST:     ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACG                         GCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCAT
genomic: ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACGgtgattatta ... gtctatgtagGCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCAT
EST: gi|211006662|gb|FL081499.1|FL081499
EST:     ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACG                         GCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCAT
genomic: ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACGgtgattatta ... gtctatgtagGCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCAT
EST: gi|101397352|gb|EB820599.1|EB820599
EST:     ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACG                         GCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCAT
genomic: ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACGgtgattatta ... gtctatgtagGCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCAT
EST: gi|50325237|gb|CO520363.1|CO520363
EST:     ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACG                         GCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCAT
genomic: ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACGgtgattatta ... gtctatgtagGCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCAT
EST: gi|50323498|gb|CO518624.1|CO518624
EST:     ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACG                         GCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCAT
genomic: ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACGgtgattatta ... gtctatgtagGCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCAT