1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTTGTTGTTAACAGTGAAATGATTGAGTACTATGACATTTCTGGTTGTTATATATTGAGGCCATGGGCGATGGAAATCTGGGAGCTACTGAAAgtaagtttatggactataaacaataagtgtcctttgttgcaaattctggaattgcaattatctcagtgctaaataatagccacccttgtatctggagact...
species | Zea mays |
transcript | GRMZM2G094123_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GTTGTTATATATTGAGGCCATGGGCGATGGAAATCTGGGAGCTACTGAAA GAATTCTTTGATGCAGAAATTAAAAAGCTGAAGCTCAAACCATATTATTTCEST: gi|15312974|gb|BI478491.1|BI478491
genomic: GTTGTTATATATTGAGGCCATGGGCGATGGAAATCTGGGAGCTACTGAAAgtaagtttat ... tttggtgcagGAATTCTTTGATGCAGAAATTAAAAAGCTGAAGCTCAAACCATATTATTTC
EST: GTTGTTATATATTGAGGCCATGGGCGATGGAAATCTGGGAGCTACTGAAA GAATTCTTTGATGCAGAAATTAAAAAGCTGAAGCTCAAACCATATTATTTCEST: gi|6865183|gb|AW360533.1|AW360533
genomic: GTTGTTATATATTGAGGCCATGGGCGATGGAAATCTGGGAGCTACTGAAAgtaagtttat ... tttggtgcagGAATTCTTTGATGCAGAAATTAAAAAGCTGAAGCTCAAACCATATTATTTC
EST: AATCTGGGAGCTACTGAAA GAATTCTTTGATGCAGAAATTAAAAAGCTGAAGCTCAAACCATATTATTTCEST: gi|211280528|gb|FL042846.1|FL042846
genomic: AATCTGGGAGCTACTGAAAgtaagtttat ... tttggtgcagGAATTCTTTGATGCAGAAATTAAAAAGCTGAAGCTCAAACCATATTATTTC
EST: GTTGTTATATATTGAGGCCATGGGCGATGGAAATCTGGGAGCTACTGAAA GAATTCTTTGATGCAGAAATTAAAAAGCTGAAGCTCAAACCATATTATTTCEST: gi|67027739|gb|CO456488.1|CO456488
genomic: GTTGTTATATATTGAGGCCATGGGCGATGGAAATCTGGGAGCTACTGAAAgtaagtttat ... tttggtgcagGAATTCTTTGATGCAGAAATTAAAAAGCTGAAGCTCAAACCATATTATTTC
EST: GTTGTTATATATTGAGGCCATGGGCGATGGAAATCTGGGAGCTACTGAAA GAATTCTTTGATGCAGAAATTAAAAAGCTGAAGCTCAAACCATATTATTTCEST: gi|211280526|gb|FL042844.1|FL042844
genomic: GTTGTTATATATTGAGGCCATGGGCGATGGAAATCTGGGAGCTACTGAAAgtaagtttat ... tttggtgcagGAATTCTTTGATGCAGAAATTAAAAAGCTGAAGCTCAAACCATATTATTTC
EST: GTTGTTATATATTGAGGCCATGGGCGATGGAAATCTGGGAGCTACTGAAA GAATTCTTTGATGCAGAAATTAAAAAGCTGAAGCTCAAACCATATTATTTCEST: gi|211280529|gb|FL042847.1|FL042847
genomic: GTTGTTATATATTGAGGCCATGGGCGATGGAAATCTGGGAGCTACTGAAAgtaagtttat ... tttggtgcagGAATTCTTTGATGCAGAAATTAAAAAGCTGAAGCTCAAACCATATTATTTC
EST: GTTGTTATATATTGAGGCCATGGGCGATGGAAATCTGGGAGCTACTGAAA GAATTCTTTGATGCAGAAATTAAAAAGCTGAAGCTCAAACCATATTATTTCEST: gi|32929788|gb|CF034600.1|CF034600
genomic: GTTGTTATATATTGAGGCCATGGGCGATGGAAATCTGGGAGCTACTGAAAgtaagtttat ... tttggtgcagGAATTCTTTGATGCAGAAATTAAAAAGCTGAAGCTCAAACCATATTATTTC
EST: GTTGTTATATATTGAGGCCATGGGCAATGGAAATCTGGGAGCTAATGAAA GAATTCTTTGATGCAGAAATTAAAAAGCTGAAGCTCAAACCATATTATTTCEST: gi|148961334|gb|EE012063.2|EE012063
genomic: GTTGTTATATATTGAGGCCATGGGCGATGGAAATCTGGGAGCTACTGAAAgtaagtttat ... tttggtgcagGAATTCTTTGATGCAGAAATTAAAAAGCTGAAGCTCAAACCATATTATTTC
EST: GTTGTTATATATTGAGGCCATGGGCGATGGAAATCTGGGAGCTACTGAAA GAATTCTTTGATGCAGAAATTAAAAAGCTGAAGCTCANACCATATTATTTCEST: gi|211280527|gb|FL042845.1|FL042845
genomic: GTTGTTATATATTGAGGCCATGGGCGATGGAAATCTGGGAGCTACTGAAAgtaagtttat ... tttggtgcagGAATTCTTTGATGCAGAAATTAAAAAGCTGAAGCTCAAACCATATTATTTC
EST: GTTGTTATATATTGAGGCCATGGGCGATGGAAATCTGGGAGCTACTGAAA GAATTCTTTGATGCAGAAATTAAAAAGCTGAAGCTCAAACCATATTATTTC
genomic: GTTGTTATATATTGAGGCCATGGGCGATGGAAATCTGGGAGCTACTGAAAgtaagtttat ... tttggtgcagGAATTCTTTGATGCAGAAATTAAAAAGCTGAAGCTCAAACCATATTATTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGTTGTTAACAGTGAAATGATTGAGTACTATGACATTTCTGGTTGTTATATATTGAGGCCATGGGCGATGGAAATCTGGGAGCTACTGAAAgtaagtttatggactataaacaataagtgtcctttgttgcaaattctggaattgcaattatctcagtgctaaataatagccacccttgtatctggagact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataaacaa