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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATAAAAGTTGTTCGCAGTATCCGCAAGTACCGTGATGCTGCAATGATTGAGATAGATGTGCTCAATCGCCTTGCAGAAAATGAAAAGTACAGATCTCTgtgagtatctcagagacctaattacttaaagtataaccctattctgtttctgacttgacagttcctcttcaatttgtcag

Basic information

species Zea mays
transcript GRMZM2G094039_T06
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G094039_T06 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g40840.1 (Oryza sativa), 5'ss of exon 4
CCATAAAAGTTGTTCGCAGTATCCGCAAGTACCGTGATGCTGCAATGATTGAGATAGATGTGCTCAATCGCCTTGCAGAAAATGAAAAGTACAGATCTCTgtgagtatctcagagacctaattacttaaagtataaccctattctgtttctgacttgacagttcctcttcaatttgtcag
| |||||||||||||| || |||||||||||| | |||||||||||||||||||| ||||||||||| ||||||||||||||||| |  |||||||| ||||||||| |||| |    |   | |  ||| | | |  || ||||||||||  | |||    || || | |  | | |||
CAATAAAAGTTGTTCGTAGCATCCGCAAGTACAGGGATGCTGCAATGATTGAGATCGATGTGCTCAACCGCCTTGCAGAAAATGAGAGATACAGATCACTgtgagtacctcaaaatatttgatcccaaaaatcttagtcttttctgtttctctcctgatcagtcttcctta-ctggccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148969962|gb|EE020875.2|EE020875
EST:     GAGATAGATGTGCTCAATCGCCTTGCAGAAAATGAAAAGTACAGATCTCT                         TTGTGTTCAAATTCAGAGATGGTTTGACTATCGTAATCATATATGCATT
genomic: GAGATAGATGTGCTCAATCGCCTTGCAGAAAATGAAAAGTACAGATCTCTgtgagtatct ... aatttgtcagTTGTGTTCAAATTCAGAGATGGTTTGACTATCGTAATCATATATGCATT
EST: gi|71432790|gb|DR813840.1|DR813840
EST:     GAGATAGATGTGCTCAATCGCCTTGCAGAAAATGAAAAGTACAGATCTCT                         TTGTGTTCAAATTCAGAGATGGTTTGACTATCGTAATCATATATGCATT
genomic: GAGATAGATGTGCTCAATCGCCTTGCAGAAAATGAAAAGTACAGATCTCTgtgagtatct ... aatttgtcagTTGTGTTCAAATTCAGAGATGGTTTGACTATCGTAATCATATATGCATT
EST: gi|26559327|gb|CA831562.1|CA831562
EST:     GAGATAGATGTGCTCAATCGCCTTGCAGAAAATGAAAAGTACAGATCTCT                         TTGTGTTCAAATTCAGAGATGGTTTGACTATCGTAATCATATATGCATT
genomic: GAGATAGATGTGCTCAATCGCCTTGCAGAAAATGAAAAGTACAGATCTCTgtgagtatct ... aatttgtcagTTGTGTTCAAATTCAGAGATGGTTTGACTATCGTAATCATATATGCATT